(virtual)aaguiar@asteria:~/projects/metagenomics/taxa_per_dam_2$ plot_taxa_summary.py -i otu_table_mc2_w_tax_L2.txt,otu_table_mc2_w_tax_L3.txt,otu_table_mc2_w_tax_L6.txt -l Phylum,Class,Genus -n 16 -c pie,bar -s -o ~/projects/metagenomics/phylum_charts_2/
Traceback (most recent call last):
File "/home/aaguiar/virtualenv/virtual/bin/plot_taxa_summary.py", line 278, in <module>
main()
File "/home/aaguiar/virtualenv/virtual/bin/plot_taxa_summary.py", line 274, in main
resize_nth_label, label_type, include_html_legend)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 1138, in make_all_charts
resize_nth_label, label_type, include_html_legend))
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 910, in get_counts
label_type, include_html_legend))
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 793, in make_HTML_table
props={'title': title})
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 315, in make_pie_chart
background_color, img_abs, 'png', 80)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 187, in make_legend
shadow=False, fancybox=False)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/figure.py", line 1251, in legend
l = Legend(self, handles, labels, *args, **kwargs)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend.py", line 385, in __init__
self._init_legend_box(handles, labels, markerfirst)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend.py", line 654, in _init_legend_box
fontsize, handlebox))
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend_handler.py", line 119, in legend_artist
fontsize, handlebox.get_transform())
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend_handler.py", line 252, in create_artists
self.update_prop(p, orig_handle, legend)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend_handler.py", line 78, in update_prop
legend._set_artist_props(legend_handle)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/legend.py", line 401, in _set_artist_props
a.set_figure(self.figure)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/matplotlib/artist.py", line 640, in set_figure
raise RuntimeError("Can not put single artist in "
RuntimeError: Can not put single artist in more than one figure
System information
==================
Platform: linux2
Python version: 2.7.3 (default, Dec 18 2014, 19:10:20) [GCC 4.6.3]
Python executable: /home/aaguiar/virtualenv/virtual/bin/python
QIIME default reference information
===================================
For details on what files are used as QIIME's default references, see here:
https://github.com/biocore/qiime-default-reference/releases/tag/0.1.3
Dependency versions
===================
QIIME library version: 1.9.1
QIIME script version: 1.9.1
qiime-default-reference version: 0.1.3
NumPy version: 1.10.1
SciPy version: 0.16.1
pandas version: 0.17.0
matplotlib version: 1.5.0
biom-format version: 2.1.5
h5py version: Not installed.
qcli version: 0.1.1
pyqi version: 0.3.2
scikit-bio version: 0.2.3
PyNAST version: 1.2.2
Emperor version: 0.9.51
burrito version: 0.9.1
burrito-fillings version: 0.1.1
sortmerna version: SortMeRNA version 2.0, 29/11/2014
sumaclust version: SUMACLUST Version 1.0.00
swarm version: Swarm 1.2.19 [Nov 4 2015 09:54:44]
gdata: Installed.
QIIME config values
===================
For definitions of these settings and to learn how to configure QIIME, see here:
http://qiime.org/install/qiime_config.html
http://qiime.org/tutorials/parallel_qiime.html
blastmat_dir: None
pick_otus_reference_seqs_fp: /home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
sc_queue: all.q
topiaryexplorer_project_dir: None
pynast_template_alignment_fp: /home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
cluster_jobs_fp: start_parallel_jobs.py
pynast_template_alignment_blastdb: None
assign_taxonomy_reference_seqs_fp: /home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
torque_queue: friendlyq
jobs_to_start: 1
slurm_time: None
denoiser_min_per_core: 50
assign_taxonomy_id_to_taxonomy_fp: /home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
temp_dir: /tmp/
slurm_memory: None
slurm_queue: None
blastall_fp: blastall
seconds_to_sleep: 1
QIIME base install test results
===============================
.........
----------------------------------------------------------------------
Ran 9 tests in 0.026s
OK
Traceback (most recent call last):
File "/home/aaguiar/virtualenv/virtual/bin/plot_taxa_summary.py", line 278, in <module>
main()
File "/home/aaguiar/virtualenv/virtual/bin/plot_taxa_summary.py", line 274, in main
resize_nth_label, label_type, include_html_legend)
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 1138, in make_all_charts
resize_nth_label, label_type, include_html_legend))
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 910, in get_counts
label_type, include_html_legend))
File "/home/aaguiar/virtualenv/virtual/local/lib/python2.7/site-packages/qiime/plot_taxa_summary.py", line 834, in make_HTML_table