convert_fastaqual_fastq.py -f seqs.fna -q seqs.qual -c fastaqual_to_fastq
Traceback (most recent call last):
File "/macqiime/anaconda/bin/convert_fastaqual_fastq.py", line 113, in <module>
main()
File "/macqiime/anaconda/bin/convert_fastaqual_fastq.py", line 110, in main
full_fasta_headers)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/convert_fastaqual_fastq.py", line 43, in convert_fastaqual_fastq
full_fastq, full_fasta_headers)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/convert_fastaqual_fastq.py", line 100, in convert_fastq
MinimalQualParser(qual_file)):
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/parse.py", line 759, in MinimalQualParser
"Invalid qual file. Check the format of the qual files.")
qiime.parse.QiimeParseError: Invalid qual file. Check the format of the qual files.
Any clues as to why I can't recombine the .fna and .qual files? It seems like the .qual output from multiple_split_libraries_fastq.py is not compatible with the convert_fastaqual_fastq.py.
Thanks again!
Alyse
I wanted to recombine them into a .fastq file.