I'm trying to run the alpha_diversity.py and alpha_rarefaction.py script but I'm not having success. In rarefaction, four new folders has created (alpha_div; alpha_div_collated; alpha_rarefaction_plots and rarefaction) but only the alpha_div_collated folder has txt files (chao1, observed_otus and PD_whole_tree).
Even if I run core_diversity_analyses.py, the error is always the same:
**ERROR RAISED DURING STEP:Removing intermediates files
Command returned exit status:1
rm: cannot remove 'Output/arare_max4415//rarefaction': Text file busy
rm: cannot remove 'Output/arare_max4415/alpha_div' Text file busy
Can anybody help me?