R1=seqs.fq
R2=R2R3.paired.fq
split_libraries_fastq.py -i $R1 -o ./demultiplex -b $R2 -m ./mapping_qiime.txt --max_barcode_errors 1 --sequence_max_n 0 --phred_quality_threshold 20 --max_bad_run_length 300 --min_per_read_length_fraction 0.75 --barcode_type 16
I'm providing .75 as the percent for min. per read length for consecutive high quality case calls.
Questions:
1- At what point QIIME trimmed read to 318?
2- By what metric is QIIME trimming reads?
Kindly help me to understand this.
Thanks in advance.