Hi Ernst!
That is the data format of your Metop-B data?
Processing the data through AAPP for example depends on the TLEs for
sure to generate the pixel positions.
I can recommend using the TLEs provided by eumetsat for the metops, eg
https://service.eumetsat.int/tle/data_out/latest_m01_tle.txt they seem
to work well for us.
Anyway, if the pixel positions are bad, than the resampling will be
off, and then the coastlines (which do not rely on the tles) will be
off too.
Best regards,
Martin