When running some itk programs, which worked a year ago, e.g. the first few lines of the itk test: MeanImageFilter.py:
import itk
dim = 2
IType = itk.Image[itk.F, dim]
imageFileName='BrainProtonDensitySliceBorder20.png'
reader = itk.ImageFileReader[IType].New()
reader.SetFileName(imageFileName)
reader.Update()
I now receive the following output and
error message when running it with Spyder (Python 2.7) :
Python 2.7.10 (default, May 23 2015,
09:40:32) [MSC v.1500 32 bit (Intel)] on win32
Type "help", "copyright",
"credits" or "license" for more information.
>>> runfile('C:/Users/koch05/Documents/WS_14_15/Book/py_mybook/codes/ch11/my_Filter.py',
wdir='C:/Users/koch05/Documents/WS_14_15/Book/py_mybook/codes/ch11')
Traceback (most recent call last):
File "<stdin>",
line 1, in <module>
File "C:\Python27\lib\site-packages\spyderlib\widgets\externalshell\sitecustomize.py",
line 688, in runfile
execfile(filename, namespace)
File "C:\Python27\lib\site-packages\spyderlib\widgets\externalshell\sitecustomize.py",
line 72, in execfile
exec(compile(scripttext,
filename, 'exec'), glob, loc)
File "C:/Users/koch05/Documents/WS_14_15/Book/py_mybook/codes/ch11/my_Filter.py",
line 30, in <module>
reader.Update()
RuntimeError: C:\u\itk-git\_b\Modules\Remote\SCIFIO\src\itkSCIFIOImageIO.cxx:274:
itk::ERROR: SCIFIOImageIO(103ADF70):
SCIFIO_PATH is not set. This environment variable must point to the directory
containing the SCIFIO JAR files
>>>
Additional remark: in the Python27 site-package,
inside the itk folder are the files SCIFIO.py and SCIFIOPython.py and in
the Configuration folder: SCIFIOConfig.py
How can I fix this problem? Any help
is highly appreciated.