Pymorph Label function

[Pankaj Kumar]

Hi,

I am using the image matrix which has been dilated using pymorph.dilation, however, when I try to label those dilated cells using pymorph.label then it gives me a following error:

Traceback (most recent call last):

  File "<editor selection>", line 1, in <module>

  File "C:\Python27\Lib\site-packages\pymorph\mmorph.py", line 737, in label

    f = pad4n(f, Bc, 0)

  File "C:\Python27\Lib\site-packages\pymorph\mmorph.py", line 4486, in pad4n

    g[ ch: -ch, cw: -cw] = f

TypeError: slice indices must be integers or None or have an __index__ method

However, when I use mahotas.label then it works well. Can you please help me in it ?

Thanks in advance.

[Luis Pedro Coelho]

Hi Pankaj,

Any reason for using pymorph? I maintained it for a while (even though I
didn't start the project), but I don't think anybody is working on it
nowadays.

Except in the few cases where there are pymorph functions not in other
packages, I would recommend the mahotas function (it's also much faster
as it's compiled C++ code).

HTH
Luis

Luis Pedro Coelho | EMBL | http://luispedro.org
My blog: http://metarabbit.wordpress.com

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[Pankaj Kumar]

Dear Luis,

Many thanks for your response. In that case, I will continue to use Mahotas libraries.

Regards,

Pankaj Kumar

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