Bug in pyteomics example file?

[Patrick Truong]

Hi,

I am trying to run through the example you have on:

https://pyteomics.readthedocs.io/en/latest/examples/example_msms.html

The pepxml.read('example.pep.xml') line does not seem to work properly. Is there any other example files that can be used to run the examples.

Best,

Patrick

[Lev Levitsky]

Hi,

thank you for reporting this issue. Some fixing will be needed in both the code and documentation. As a workaround, you can read the file like this:

with pepxml.PepXML('example.pep.xml', use_index=False) as psms:

Best regards,

Lev

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Lev Levitsky
Institute for Energy Problems of Chemical Physics RAS
Laboratory of Physical and Chemical Methods for Structure Analysis
Leninsky pr. 38, bld. 2 119334 Moscow Russia
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