Feature extraction via 3D slicer

Bassam Abunahel

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Nov 21, 2019, 6:25:08 PM11/21/19

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Hi Pyradiomics team. Appreciate your efforts

Please I concern about the process for extracting the features using the extension (radiomics module) in 3D slicer ?

I've downloaded the slicer and uploaded the MR images, but I have chosen manual customization for feature extraction (all features classes available) , but unfortunately it does NOT extract the features (apply button not active),

Could you please just guide me how to correctly extract the features using 3D slicer ?

regards,

Joost van Griethuysen

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Nov 22, 2019, 4:08:06 AM11/22/19

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The apply button will be active if you have selected an input volume node, an input mask/segmentation node and either selected manual customization or provided slicer with a valid parameter file.

Regards,

Joost

Op vrijdag 22 november 2019 00:25:08 UTC+1 schreef Bassam:

Bassam

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Nov 25, 2019, 2:14:27 AM11/25/19

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kindly, I had install the software properly and I tried also to use command line to run the pyradiomics for single slice, but unfortunately its not working and I had received the down message:

'pyradiomics' is not recognized as an internal or external command,
operable program or batch file.

Joost van Griethuysen

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Nov 25, 2019, 8:57:54 AM11/25/19

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In this case, either PyRadiomics is not installed correctly, or the python scripts folder has not been added to your PATH environment variable. Does the 'python' command work?