How to use pyradiomicsbatch

Tony Alexandre Medeiros

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Nov 22, 2019, 11:45:20 AM11/22/19

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Hello Dr. Joost,

I would like to use the feature extraction option in batch.

In the pyradiomicsbatch -h command statement, it says I need to have a CSV file containing image and mask combinations. The help cites other features as well.

Could you send me an example of this file? So I can have it as an example for mounting my.

Again, thank you so much for the support.

Tony

Joost van Griethuysen

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Nov 25, 2019, 1:17:35 AM11/25/19

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An example of the input CSV is included in the examples folder on the PyRadiomics Github repository (https://github.com/Radiomics/pyradiomics). Additionally, the structure of the file is explained in the documentation (section Usage).

Regards,

Joost

Op vrijdag 22 november 2019 17:45:20 UTC+1 schreef Tony Alexandre Medeiros:

Tony Alexandre Medeiros

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Nov 25, 2019, 11:16:06 AM11/25/19

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Thank you very much,

I confess that I have not looked at all the available examples, as well as all the documentation. I'll do it. I am quite looking forward to using this library, it is fantastic.

Tony

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Tony Alexandre Medeiros

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Nov 26, 2019, 8:26:06 PM11/26/19

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Dr. Joost,

when executing the pyradiomics batch command, some of the images show the error as per the image in the attachment.

I looked at the "customizing the extraction" item in the documentation, but couldn't find the solution.

** When I extract only the image that presented the error, the extraction occurs correctly.

Could you help me again.

Thank you

Tony

Em segunda-feira, 25 de novembro de 2019 03:17:35 UTC-3, Joost van Griethuysen escreveu:

error_pyradiomics_batch.png

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