pyradiomics

PyRadiomics related discussions are now moved to a new community in the Slicer discourse forum: https

Dear Joost, Thank you for your response! Regarding your first point, you are correct - I only want

Thank you for your contribution, Renato! I included pointer to the top-level folder for documentation

Can you extract using the commandline and enable logging? If you can share the log, this would

No, that just gives the first couple of lines from the dataset. To select features you have to define

I'm not entirely sure what your process is in step 1, but it seems to me that you don't

If you enable resampling, all images/masks are resampled to the specified spacing, prior to any

Thank you guys, item 2.3.1.1. Image Types of the documentation is explaining my doubt. Tony. Em

Can you please load the images.zip again. On Wednesday, June 14, 2017 at 12:49:49 PM UTC+3, Pranita

In a way, it's an average across slices. The entire 3D ROI is used, but only the offsets that

Dr. Joost, when executing the pyradiomics batch command, some of the images show the error as per the

Hello Hannah, The Slicer extensions is aimed at single case processing. For batch processing, The

You need to combine them outside of PyRadiomics (by setting the to the same value). This can be done

In this case, either PyRadiomics is not installed correctly, or the python scripts folder has not

Thanks for the message Joost, Although I am not sure why but generally with slicer 3d and running

Thanks for the answer. I created the mask in 3DSlicer. I imported the dicom images and saved in the

What software are you using? In case you are using 3D Slicer, this question is better suited for the

Hi.. I am working on longitudinal brain images in a pediatric population to analysis change in

Thanks, Dr.Joost. 1) HU values are, by definition, in the range [-1000, 4000], so negative values is

After use plastimatch, the RTstruct image have this problem, so I want to use resample. But it still

This is documented in the pyradiomics docs: forced 2D extraction. Regards, Joost Op vrijdag 1

There have been some studies here and there investigating the influence of the type of segmentation

Thank you Powell - at this point, we have significant evidence this and other DICOM capabilities are

All settings that customize the wavelet filtering are documented in the online documentation (

Ad 1) and 2) I'm afraid I don't have a definitive answer for you here. My only advise is to

If you want to install SimpleITK using conda, you need to specify the channel it's hosted on. ``

Can you share the exact settings you applied, as well as the PyRadiomics log file? Op maandag 7

In response to Andrey's excellent suggestions, I'd like to invite you to try to adapt your

Thank you for your advise, I will try my best to have DICOM images. On Tuesday, October 1, 2019 at 4:

As to 'registering the image', see the earlier suggestions in this topic. If the segmentation