[Pypsa-Eur] rasterIOError when max_ and min_depth are set
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Theo Moers
Jan 21, 2025, 8:37:18 AM1/21/25
to pypsa
Hi everyone,
I'm trying to run a pysa-eur sector-coupled scenario with all countries and 39 clusters that is pretty similar to the default config. At some point I am getting the error below. I have tried installing the suggested plug-in but that doesn't seem to work with the current pypsa-eur environment. I can get rid of the error message when setting the max_depth and min_depth in the config file to false, as the nc file is then not needed, but that results in very high off-shore wind capacities as there is not depth constraint.
Any chance that one of you might be able to help? Thanks!
Best,
Theo
---
localrule build_clustered_population_layouts:
input: resources/allc_sec_depthtest/pop_layout_total.nc, resources/allc_sec_depthtest/pop_layout_urban.nc, resources/allc_sec_depthtest/pop_layout_rural.nc, resources/allc_sec_depthtest/regions_onshore_base_s_39.geojson, cutouts/europe-2013-sarah3-era5.nc
output: resources/allc_sec_depthtest/pop_layout_base_s_39.csv
log: logs/allc_sec_depthtest/build_clustered_population_layouts_s_39.log
jobid: 57
benchmark: benchmarks/allc_sec_depthtest/build_clustered_population_layouts/s_39
reason: Missing output files: resources/allc_sec_depthtest/pop_layout_base_s_39.csv; Input files updated by another job: resources/allc_sec_depthtest/pop_layout_total.nc, resources/allc_sec_depthtest/pop_layout_rural.nc, resources/allc_sec_depthtest/regions_onshore_base_s_39.geojson, resources/allc_sec_depthtest/pop_layout_urban.nc
wildcards: clusters=39
resources: tmpdir=/tmp/8007850.1.debian.q, mem_mb=10000, mem_mib=9537
ERROR:root:Uncaught exception
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "rasterio/_base.pyx", line 310, in rasterio._base.DatasetBase.__init__
File "rasterio/_base.pyx", line 221, in rasterio._base.open_dataset
File "rasterio/_err.pyx", line 359, in rasterio._err.exc_wrap_pointer
rasterio._err.CPLE_OpenFailedError: 'data/bundle/gebco/GEBCO_2014_2D.nc' not recognized as being in a supported file format. It could have been recognized by driver HDF5, but plugin gdal_HDF5.so is not available in your installation. You may install it with 'conda install -c conda-forge libgdal-hdf5'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "~/.conda/envs/pypsa-eur/lib/python3.12/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 666, in _process_func
return shape_availability_reprojected(shapes.loc[[i]], *args)[0]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 361, in shape_availability_reprojected
masked, transform = shape_availability(geometry, excluder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 286, in shape_availability
excluder.open_files()
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 477, in open_files
raster = rio.open(raster)
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/rasterio/env.py", line 463, in wrapper
return f(*args, **kwds)
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/rasterio/__init__.py", line 356, in open
dataset = DatasetReader(path, driver=driver, sharing=sharing, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "rasterio/_base.pyx", line 312, in rasterio._base.DatasetBase.__init__
rasterio.errors.RasterioIOError: 'data/bundle/gebco/GEBCO_2014_2D.nc' not recognized as being in a supported file format. It could have been recognized by driver HDF5, but plugin gdal_HDF5.so is not available in your installation. You may install it with 'conda install -c conda-forge libgdal-hdf5'
"""
input: resources/allc_sec_depthtest/pop_layout_total.nc, resources/allc_sec_depthtest/pop_layout_urban.nc, resources/allc_sec_depthtest/pop_layout_rural.nc, resources/allc_sec_depthtest/regions_onshore_base_s_39.geojson, cutouts/europe-2013-sarah3-era5.nc
output: resources/allc_sec_depthtest/pop_layout_base_s_39.csv
log: logs/allc_sec_depthtest/build_clustered_population_layouts_s_39.log
jobid: 57
benchmark: benchmarks/allc_sec_depthtest/build_clustered_population_layouts/s_39
reason: Missing output files: resources/allc_sec_depthtest/pop_layout_base_s_39.csv; Input files updated by another job: resources/allc_sec_depthtest/pop_layout_total.nc, resources/allc_sec_depthtest/pop_layout_rural.nc, resources/allc_sec_depthtest/regions_onshore_base_s_39.geojson, resources/allc_sec_depthtest/pop_layout_urban.nc
wildcards: clusters=39
resources: tmpdir=/tmp/8007850.1.debian.q, mem_mb=10000, mem_mib=9537
ERROR:root:Uncaught exception
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "rasterio/_base.pyx", line 310, in rasterio._base.DatasetBase.__init__
File "rasterio/_base.pyx", line 221, in rasterio._base.open_dataset
File "rasterio/_err.pyx", line 359, in rasterio._err.exc_wrap_pointer
rasterio._err.CPLE_OpenFailedError: 'data/bundle/gebco/GEBCO_2014_2D.nc' not recognized as being in a supported file format. It could have been recognized by driver HDF5, but plugin gdal_HDF5.so is not available in your installation. You may install it with 'conda install -c conda-forge libgdal-hdf5'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "~/.conda/envs/pypsa-eur/lib/python3.12/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 666, in _process_func
return shape_availability_reprojected(shapes.loc[[i]], *args)[0]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 361, in shape_availability_reprojected
masked, transform = shape_availability(geometry, excluder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 286, in shape_availability
excluder.open_files()
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/atlite/gis.py", line 477, in open_files
raster = rio.open(raster)
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/rasterio/env.py", line 463, in wrapper
return f(*args, **kwds)
^^^^^^^^^^^^^^^^
File "~/.conda/envs/pypsa-eur/lib/python3.12/site-packages/rasterio/__init__.py", line 356, in open
dataset = DatasetReader(path, driver=driver, sharing=sharing, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "rasterio/_base.pyx", line 312, in rasterio._base.DatasetBase.__init__
rasterio.errors.RasterioIOError: 'data/bundle/gebco/GEBCO_2014_2D.nc' not recognized as being in a supported file format. It could have been recognized by driver HDF5, but plugin gdal_HDF5.so is not available in your installation. You may install it with 'conda install -c conda-forge libgdal-hdf5'
"""
Environment:
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
affine 2.4.0 pyhd8ed1ab_1 conda-forge
alsa-lib 1.2.13 hb9d3cd8_0 conda-forge
ampl-asl 1.0.0 h5888daf_2 conda-forge
amply 0.1.6 pyhd8ed1ab_1 conda-forge
aom 3.9.1 hac33072_0 conda-forge
appdirs 1.4.4 pyhd8ed1ab_1 conda-forge
argparse-dataclass 2.0.0 pyhd8ed1ab_0 conda-forge
asttokens 3.0.0 pyhd8ed1ab_1 conda-forge
atk-1.0 2.38.0 h04ea711_2 conda-forge
atlite 0.3.0 pyhd8ed1ab_1 conda-forge
attrs 24.3.0 pyh71513ae_0 conda-forge
aws-c-auth 0.8.0 hb921021_15 conda-forge
aws-c-cal 0.8.1 h1a47875_3 conda-forge
aws-c-common 0.10.6 hb9d3cd8_0 conda-forge
aws-c-compression 0.3.0 h4e1184b_5 conda-forge
aws-c-event-stream 0.5.0 h7959bf6_11 conda-forge
aws-c-http 0.9.2 hefd7a92_4 conda-forge
aws-c-io 0.15.3 h831e299_5 conda-forge
aws-c-mqtt 0.11.0 h11f4f37_12 conda-forge
aws-c-s3 0.7.7 hf454442_0 conda-forge
aws-c-sdkutils 0.2.1 h4e1184b_4 conda-forge
aws-checksums 0.2.2 h4e1184b_4 conda-forge
aws-crt-cpp 0.29.7 hd92328a_7 conda-forge
aws-sdk-cpp 1.11.458 hc430e4a_4 conda-forge
azure-core-cpp 1.14.0 h5cfcd09_0 conda-forge
azure-identity-cpp 1.10.0 h113e628_0 conda-forge
azure-storage-blobs-cpp 12.13.0 h3cf044e_1 conda-forge
azure-storage-common-cpp 12.8.0 h736e048_1 conda-forge
azure-storage-files-datalake-cpp 12.12.0 ha633028_1 conda-forge
beautifulsoup4 4.12.3 pyha770c72_1 conda-forge
blosc 1.21.6 he440d0b_1 conda-forge
bokeh 3.6.2 pyhd8ed1ab_1 conda-forge
bottleneck 1.4.2 py312hc0a28a1_0 conda-forge
branca 0.8.1 pyhd8ed1ab_0 conda-forge
brotli 1.1.0 hb9d3cd8_2 conda-forge
brotli-bin 1.1.0 hb9d3cd8_2 conda-forge
brotli-python 1.1.0 py312h2ec8cdc_2 conda-forge
bzip2 1.0.8 h4bc722e_7 conda-forge
c-ares 1.34.4 hb9d3cd8_0 conda-forge
c-blosc2 2.15.2 h3122c55_1 conda-forge
ca-certificates 2024.12.14 hbcca054_0 conda-forge
cairo 1.18.2 h3394656_1 conda-forge
cartopy 0.24.0 py312hf9745cd_0 conda-forge
cdsapi 0.7.5 pyhd8ed1ab_1 conda-forge
certifi 2024.12.14 pyhd8ed1ab_0 conda-forge
cffi 1.17.1 py312h06ac9bb_0 conda-forge
cfgv 3.3.1 pyhd8ed1ab_1 conda-forge
cftime 1.6.4 py312hc0a28a1_1 conda-forge
charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge
click 8.1.8 pyh707e725_0 conda-forge
click-plugins 1.1.1 pyhd8ed1ab_1 conda-forge
cligj 0.7.2 pyhd8ed1ab_2 conda-forge
cloudpickle 3.1.0 pyhd8ed1ab_2 conda-forge
coin-or-cbc 2.10.12 h8b142ea_1 conda-forge
coin-or-cgl 0.60.9 h1d3f3f2_0 conda-forge
coin-or-clp 1.17.10 h07f2a63_0 conda-forge
coin-or-osi 0.108.11 h6514dde_1 conda-forge
coin-or-utils 2.11.12 h99da652_1 conda-forge
coincbc 2.10.12 1_metapackage conda-forge
colorama 0.4.6 pyhd8ed1ab_1 conda-forge
comm 0.2.2 pypi_0 pypi
conda-inject 1.3.2 pyhd8ed1ab_0 conda-forge
configargparse 1.7 pyhd8ed1ab_1 conda-forge
connection_pool 0.0.3 pyhd3deb0d_0 conda-forge
contourpy 1.3.1 py312h68727a3_0 conda-forge
country_converter 1.2 pyhd8ed1ab_0 conda-forge
cppad 20240000.7 h5888daf_1 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cyrus-sasl 2.1.27 h54b06d7_7 conda-forge
cytoolz 1.0.1 py312h66e93f0_0 conda-forge
dask 2024.12.1 pyhd8ed1ab_0 conda-forge
dask-core 2024.12.1 pyhd8ed1ab_0 conda-forge
dask-expr 1.1.21 pyhd8ed1ab_0 conda-forge
datapi 0.1.2 pyhd8ed1ab_0 conda-forge
datrie 0.8.2 py312h66e93f0_8 conda-forge
dav1d 1.2.1 hd590300_0 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
debugpy 1.8.11 py312h2ec8cdc_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_1 conda-forge
deprecation 2.1.0 pyh9f0ad1d_0 conda-forge
descartes 1.1.0 pyhd8ed1ab_5 conda-forge
distlib 0.3.9 pyhd8ed1ab_1 conda-forge
distributed 2024.12.1 pyhd8ed1ab_0 conda-forge
docutils 0.21.2 pyhd8ed1ab_1 conda-forge
double-conversion 3.3.0 h59595ed_0 conda-forge
dpath 2.2.0 pyha770c72_0 conda-forge
entsoe-py 0.6.11 pyhd8ed1ab_0 conda-forge
et_xmlfile 2.0.0 pyhd8ed1ab_1 conda-forge
exceptiongroup 1.2.2 pyhd8ed1ab_1 conda-forge
executing 2.1.0 pyhd8ed1ab_1 conda-forge
expat 2.6.4 h5888daf_0 conda-forge
filelock 3.16.1 pyhd8ed1ab_1 conda-forge
fiona 1.10.1 py312h02b19dd_3 conda-forge
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geos 3.13.0 h5888daf_0 conda-forge
geotiff 1.7.3 h77b800c_3 conda-forge
gflags 2.2.2 h5888daf_1005 conda-forge
giflib 5.2.2 hd590300_0 conda-forge
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glog 0.7.1 hbabe93e_0 conda-forge
glpk 5.0 h445213a_0 conda-forge
gmp 6.3.0 hac33072_2 conda-forge
graphite2 1.3.13 h59595ed_1003 conda-forge
graphviz 12.0.0 hba01fac_0 conda-forge
gtk2 2.24.33 h8ee276e_7 conda-forge
gts 0.7.6 h977cf35_4 conda-forge
gurobipy 12.0.0 pypi_0 pypi
h2 4.1.0 pyhd8ed1ab_1 conda-forge
harfbuzz 10.1.0 h0b3b770_0 conda-forge
hdf4 4.2.15 h2a13503_7 conda-forge
hdf5 1.14.4 nompi_h2d575fe_105 conda-forge
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hpack 4.0.0 pyhd8ed1ab_1 conda-forge
humanfriendly 10.0 pyh707e725_8 conda-forge
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icu 75.1 he02047a_0 conda-forge
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libarrow-substrait 18.1.0 h08228c5_7_cpu conda-forge
libavif16 1.1.1 h1909e37_2 conda-forge
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pytz 2024.1 pyhd8ed1ab_0 conda-forge
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xz 5.6.3 hbcc6ac9_1 conda-forge
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zeromq 4.3.5 h3b0a872_7 conda-forge
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zstd 1.5.6 ha6fb4c9_0 conda-forge
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