question in the pyne installation

xiaoh...@163.com

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Dec 7, 2023, 7:29:50 AM12/7/23

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Hello,

I am trying to install PYNE in WSL2. But I am running into some issues as follows:

[ 11%] Building CXX object src/CMakeFiles/pyne.dir/atomic_data.cpp.o

[ 12%] Building CXX object src/CMakeFiles/pyne.dir/data.cpp.o

In file included from /mnt/c/Users/Administrator/anaconda3/Library/include/hdf5.h:22,

from /mnt/e/Calculation_soft/PYNE/pyne-0.7.6/src/data.h:20,

from /mnt/e/Calculation_soft/PYNE/pyne-0.7.6/src/data.cpp:3:

/mnt/c/Users/Administrator/anaconda3/Library/include/H5public.h:247:19: error: conflicting declaration ‘typedef long long int ssize_t’

247 | typedef long long ssize_t;

| ^~~~~~~

In file included from /usr/include/stdlib.h:394,

from /usr/include/c++/9/cstdlib:75,

from /usr/include/c++/9/ext/string_conversions.h:41,

from /usr/include/c++/9/bits/basic_string.h:6496,

from /usr/include/c++/9/string:55,

from /usr/include/c++/9/bits/locale_classes.h:40,

from /usr/include/c++/9/bits/ios_base.h:41,

from /usr/include/c++/9/ios:42,

from /usr/include/c++/9/ostream:38,

from /usr/include/c++/9/iostream:39,

from /mnt/e/Calculation_soft/PYNE/pyne-0.7.6/src/data.h:8,

from /mnt/e/Calculation_soft/PYNE/pyne-0.7.6/src/data.cpp:3:

/usr/include/x86_64-linux-gnu/sys/types.h:108:19: note: previous declaration as ‘typedef __ssize_t ssize_t’

108 | typedef __ssize_t ssize_t;

| ^~~~~~~

make[2]: *** [src/CMakeFiles/pyne.dir/build.make:86: src/CMakeFiles/pyne.dir/data.cpp.o] Error 1

make[1]: *** [CMakeFiles/Makefile2:225: src/CMakeFiles/pyne.dir/all] Error 2

make: *** [Makefile:130: all] Error 2

--------------------

If you are having issues building pyne, please report your problem to pyne...@googlegroups.com or look for help at http://pyne.io

--------------------

Traceback (most recent call last):

File "setup.py", line 419, in <module>

main()

File "setup.py", line 403, in main

main_safe(ns)

File "setup.py", line 395, in main_safe

main_body(ns)

File "setup.py", line 378, in main_body

rtn = subprocess.check_call(['make'] + ns.make_args, cwd=ns.build_dir)

File "/usr/lib/python3.8/subprocess.py", line 364, in check_call

raise CalledProcessError(retcode, cmd)

subprocess.CalledProcessError: Command '['make']' returned non-zero exit status 2.

The installing method is refer to this paper as follows. The version of pyne is 0.7.7

Installing PyNE on Windows via WSL - Alex Malins

Thanks for your help.

Best Wishes !

Xiaohe

xiaoh...@163.com

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Dec 8, 2023, 11:52:37 PM12/8/23

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Hello,

When I uninstall anaconda from windows, this problem is solved.

However, when I use "python setup.py install --user", anohter problem is occured.

So, how can this problem be solved?

Thanks for your help.

Best Wishes !

Xiaohe

-------- Forwarding messages --------
From: "xiaoh...@163.com" <xiaoh...@163.com>
Date: 2023-12-07 19:14:10
To: pyne...@googlegroups.com
Subject: question in the pyne installation

Ahnaf Tahmid

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Dec 9, 2023, 4:26:26 AM12/9/23

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Hi Xiaohe,

You may not have installed all the dependencies.

There is a related issue available on Github
Link: https://github.com/pyne/pyne/issues/1487

Tahmid

Paul Wilson

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Dec 10, 2023, 8:12:02 PM12/10/23

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Hello,

First, I have to say that we don’t officially support building PyNE on Windows with the version you are attempting.

That said, I’d definitely need to see more of your build process to better understand what’s happening. I’d like to know the full command you are using to try to build PyNE and all the output up to this point of failure.

Thanks,

Paul

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Donkiss Zidane

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Jun 3, 2024, 4:32:31 AMJun 3

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Donkiss Zidane

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Jun 3, 2024, 4:33:46 AMJun 3

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