biodb down again?

[Jacob Biesinger]

Traceback (most recent call last):

  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1085, in update

    self, **mdbArgs)

  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 915, in __init__

    storage = XMLRPCMetabase(dbpath, self, **kwargs)

  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 335, in __init__

    self.server = get_connection(url, 'index')

  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 94, in __call__

    return s[name] # GET THE REQUESTED OBJECT PROXY FROM THE SERVER

  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 75, in __getitem__

    methodDict = self.server.objectInfo(name)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1224, in __call__

    return self.__send(self.__name, args)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1575, in __request

    verbose=self.__verbose

  File "/usr/lib/python2.7/xmlrpclib.py", line 1264, in request

    return self.single_request(host, handler, request_body, verbose)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1294, in single_request

    response = h.getresponse(buffering=True)

  File "/usr/lib/python2.7/httplib.py", line 1027, in getresponse

    response.begin()

error: [Errno 104] Connection reset by peer

WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.  Continuing...

This happens after a *very* long wait...

--
Jake Biesinger
Graduate Student
Xie Lab, UC Irvine

[Namshin Kim]

Hi Jake,

 

I'd just restarted the pygr server. I think it has been down due to a bunch of pygr slice queries. pygr server via XMLRPC may not handle such a big queries.

 

 

--

Namshin Kim

 

 

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[Jacob Biesinger]

Well they aren't from me-- I'm just using download=True to grab hg19...

--
Jake Biesinger
Graduate Student
Xie Lab, UC Irvine