biodb down

[Tommy Tang]

Hi,

It looks like biodb is down again. could you please fix it? Thanks.

dir(worldbase)

^CTraceback (most recent call last):

  File "<stdin>", line 1, in <module>

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1463, in __dir__

    return ResourcePath.__dir__(self, '', 0)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1435, in __dir__

    l = self._mdb.dir(prefix)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1135, in dir

    self.update(keepCurrentPath=True) # make sure metabases loaded

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1085, in update

    self, **mdbArgs)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 915, in __init__

    storage = XMLRPCMetabase(dbpath, self, **kwargs)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 335, in __init__

    self.server = get_connection(url, 'index')

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 94, in __call__

    return s[name] # GET THE REQUESTED OBJECT PROXY FROM THE SERVER

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 75, in __getitem__

    methodDict = self.server.objectInfo(name)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1224, in __call__

    return self.__send(self.__name, args)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1578, in __request

    verbose=self.__verbose

  File "/usr/lib/python2.7/xmlrpclib.py", line 1264, in request

    return self.single_request(host, handler, request_body, verbose)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1294, in single_request

    response = h.getresponse(buffering=True)

  File "/usr/lib/python2.7/httplib.py", line 1030, in getresponse

    response.begin()

  File "/usr/lib/python2.7/httplib.py", line 407, in begin

    version, status, reason = self._read_status()

  File "/usr/lib/python2.7/httplib.py", line 365, in _read_status

    line = self.fp.readline()

  File "/usr/lib/python2.7/socket.py", line 447, in readline

    data = self._sock.recv(self._rbufsize)

KeyboardInterrupt

>>> dir(worldbase)

Traceback (most recent call last):

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1085, in update

    self, **mdbArgs)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 915, in __init__

    storage = XMLRPCMetabase(dbpath, self, **kwargs)

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 335, in __init__

    self.server = get_connection(url, 'index')

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 94, in __call__

    return s[name] # GET THE REQUESTED OBJECT PROXY FROM THE SERVER

  File "/home/tommy/.local/lib/python2.7/site-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 75, in __getitem__

    methodDict = self.server.objectInfo(name)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1224, in __call__

    return self.__send(self.__name, args)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1578, in __request

    verbose=self.__verbose

  File "/usr/lib/python2.7/xmlrpclib.py", line 1264, in request

    return self.single_request(host, handler, request_body, verbose)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1289, in single_request

    self.send_request(h, handler, request_body)

  File "/usr/lib/python2.7/xmlrpclib.py", line 1391, in send_request

    connection.putrequest("POST", handler, skip_accept_encoding=True)

CannotSendRequest

WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.  Continuing...