Accessing AnnotDB's from NLMSA?
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Jacob Biesinger
Jul 23, 2010, 2:30:23 PM7/23/10
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Hi!
Is there a simple way to get the list of all annotationDB's referenced in an NLMSA without iterating over the entire NLMSA?
C. Titus Brown
Jul 23, 2010, 2:33:30 PM7/23/10
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On Fri, Jul 23, 2010 at 11:30:23AM -0700, Jacob Biesinger wrote:
> Is there a simple way to get the list of all annotationDB's referenced in an
> NLMSA without iterating over the entire NLMSA?
> Is there a simple way to get the list of all annotationDB's referenced in an
> NLMSA without iterating over the entire NLMSA?
Hi Jake,
they are in the seqDict for the NLMSA, I believe. I don't remember if
there's a simple way to see if a specific db is a sequence DB or an annotation
DB without looking at a value, though.
cheers,
--titus
--
C. Titus Brown, c...@msu.edu
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