biodb down?

13 views
Skip to first unread message

Jacob Biesinger

unread,
Sep 19, 2011, 5:45:27 PM9/19/11
to pygr...@googlegroups.com
from pygr import worldbase
hg19 = worldbase.Bio.Seq.Genome.HUMAN.hg19()

Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 1085, in update
    self, **mdbArgs)
  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 915, in __init__
    storage = XMLRPCMetabase(dbpath, self, **kwargs)
  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/metabase.py", line 335, in __init__
    self.server = get_connection(url, 'index')
  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 94, in __call__
    return s[name] # GET THE REQUESTED OBJECT PROXY FROM THE SERVER
  File "/usr/local/lib/python2.7/dist-packages/pygr-0.8.2-py2.7-linux-x86_64.egg/pygr/coordinator.py", line 75, in __getitem__
    methodDict = self.server.objectInfo(name)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1224, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1575, in __request
    verbose=self.__verbose
  File "/usr/lib/python2.7/xmlrpclib.py", line 1264, in request
    return self.single_request(host, handler, request_body, verbose)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1289, in single_request
    self.send_request(h, handler, request_body)
  File "/usr/lib/python2.7/xmlrpclib.py", line 1391, in send_request
    connection.putrequest("POST", handler, skip_accept_encoding=True)
CannotSendRequest

WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.  Continuing...


--
Jake Biesinger
Graduate Student
Xie Lab, UC Irvine

Diane Trout

unread,
Sep 19, 2011, 6:44:16 PM9/19/11
to pygr...@googlegroups.com
> WARNING: error accessing metabase http://biodb2.bioinformatics.ucla.edu:5000.
> Continuing...
>
>
> --
> Jake Biesinger
> Graduate Student
> Xie Lab, UC Irvine

Looks down to me too.

Diane

signature.asc

Namshin Kim

unread,
Sep 19, 2011, 7:39:05 PM9/19/11
to pygr...@googlegroups.com
biodb2 pygr server has been restarted. Please check it again.
Reply all
Reply to author
Forward
0 new messages