4.0.0 released!

pydna

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Sep 17, 2021, 7:21:13 AM9/17/21

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4.0.0 has been released.

Available from pypi and anaconda.org

There may be a problem with the CAI module at the moment.

This can be installed from anaconda.org

/bjorn

Fatemeh Arabi

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Sep 27, 2021, 10:31:40 AM9/27/21

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Dear pydna

Would you please help me to change the gel percentage in gel module?

Thank you.

Best

Fatemeh

pydna

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Sep 27, 2021, 11:00:53 AM9/27/21

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Hi, The new gel module does not implement this concept. The mobility of the DNA is

calculated from a reference gel image. You can calculate this from your own reference gel if you like.

/bjorn

Fatemeh Arabi

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Sep 27, 2021, 12:59:45 PM9/27/21

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Thank you.

I use 4.0.0a8 version. What is the default gel percentage in this version? How can I use a reference gel?

Best

Fatemeh

Message has been deleted

Fatemeh Arabi

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Sep 27, 2021, 1:55:42 PM9/27/21

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I used this code for preparing the gel images for my publication. Is gel module correct with acceptable results with these codes in 4.0.0a8 version?

from pydna.gel import gel

from pydna.ladders import GeneRuler_1kb_plus

from pydna.dseqrecord import Dseqrecord

mix = [Dseqrecord("A"*181), Dseqrecord("A"*287)]

gel([GeneRuler_1kb_plus, mix])

Thank you.

On Friday, September 17, 2021 at 4:21:13 AM UTC-7 pydna wrote:

Björn Johansson

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Mar 7, 2022, 1:02:06 PM3/7/22

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Hi, sorry for not checking back in a while. Did you solve your

problem?

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