Markdown error
9 views
Skip to first unread message
NRW
Mar 8, 2016, 10:47:25 AM3/8/16
to pydna
Hi all,
I have posted on SO about an error I am getting while trying to run pydna.
http://stackoverflow.com/questions/35871746/python-error-ipython-display-import-markdown-as-display
I have posted on SO about an error I am getting while trying to run pydna.
http://stackoverflow.com/questions/35871746/python-error-ipython-display-import-markdown-as-display
Has anyone else run into this issue? I installed via pip.
Thanks in advance!
Björn Johansson
Mar 8, 2016, 11:37:06 AM3/8/16
to pydna
Hi,
Using pip means that you need to install some dependencies manually (they can not be installed by pip).
Ipython is meant to be an optional dependency, but if it is there it has to be version 4 or greater.
Please tell me what version you have of pydna and Ipython?
/bjorn
Nick Waters
Mar 8, 2016, 11:41:25 AM3/8/16
to pydna
Hi Bjorn,
Thanks for your reply! here is the result of pip freeze:
pip freeze [10:52AM]
adium-theme-ubuntu==0.3.4
appdirs==1.4.0
apt-xapian-index==0.45
astroid==1.0.1
beautifulsoup4==4.2.1
biom-format==2.1.4
biopython==1.66
burrito==0.9.0
burrito-fillings==0.1.0
chardet==2.0.1
cogent==1.5.3
colorama==0.2.5
command-not-found==0.3
cvxopt==1.1.4
Cython==0.20.1.post0
debtagshw==0.1
decorator==3.4.0
defer==1.0.6
dirspec==13.10
docutils==0.11
duplicity==0.6.23
emperor==0.9.51
future==0.14.3
gnuplot-py==1.8
h5py==2.2.1
html5lib==0.999
httplib2==0.8
ipython==1.2.1
Jinja2==2.7.2
joblib==0.7.1
lockfile==0.8
logilab-common==0.61.0
lxml==3.3.3
MACS==1.4.2
Markdown==2.6.5
MarkupSafe==0.18
matplotlib==1.3.1
mercurial==2.8.2
mpi4py==1.3.1
MySQL-python==1.2.3
natsort==3.5.1
netifaces==0.8
networkx==1.11
nose==1.3.1
numexpr==2.2.2
numpy==1.8.2
oauthlib==0.6.1
oneconf==0.3.7.14.4.1
openpyxl==1.7.0
PAM==0.4.2
pandas==0.13.1
patsy==0.2.1
pep8==1.4.6
pexpect==3.1
Pillow==2.3.0
piston-mini-client==0.7.5
prettytable==0.7.2
psutil==1.2.1
pycrypto==2.6.1
pycryptopp==0.6.0.1206569328141510525648634803928199668821045408958
pycups==1.9.66
pycurl==7.19.3
pydna==1.0.0
pyflakes==0.8.1
Pygments==1.6
pygobject==3.12.0
pylint==1.1.0
pynast==1.2.2
pyOpenSSL==0.13
pyparsing==2.0.1
pyqi==0.3.2
pyserial==2.6
pysmbc==1.0.14.1
pysqlite==2.6.3
python-apt===0.9.3.5ubuntu2
python-dateutil==1.5
python-debian===0.1.21-nmu2ubuntu2
pytz==2012rc0
pyxdg==0.25
pyzmq==14.0.1
qcli==0.1.0
qiime-default-reference==0.1.1
qreator==13.5.3
qrencode==1.1
reportlab==3.0
requests==2.2.1
roman==2.0.0
rope==0.9.2
rpy==1.0.3
rpy2==2.6.0
scikit-bio==0.2.3
scipy==0.13.3
sessioninstaller==0.0.0
simplegeneric==0.8.1
simplejson==3.3.1
singledispatch==3.4.0.2
six==1.5.2
software-center-aptd-plugins==0.0.0
Sphinx==1.2.2
spyder==2.2.5
ssh-import-id==3.21
statsmodels==0.5.0
system-service==0.1.6
tables==3.1.1
Twisted-Core==13.2.0
Twisted-Web==13.2.0
unity-scope-bio-linux==0.3.0
urllib3==1.7.1
virtualenv==14.0.6
vobject==0.8.1rc0
weblogo==3.3
xlrd==0.9.2
xlwt==0.7.5
zope.interface==4.0.5
Thanks for your reply! here is the result of pip freeze:
pip freeze [10:52AM]
adium-theme-ubuntu==0.3.4
appdirs==1.4.0
apt-xapian-index==0.45
astroid==1.0.1
beautifulsoup4==4.2.1
biom-format==2.1.4
biopython==1.66
burrito==0.9.0
burrito-fillings==0.1.0
chardet==2.0.1
cogent==1.5.3
colorama==0.2.5
command-not-found==0.3
cvxopt==1.1.4
Cython==0.20.1.post0
debtagshw==0.1
decorator==3.4.0
defer==1.0.6
dirspec==13.10
docutils==0.11
duplicity==0.6.23
emperor==0.9.51
future==0.14.3
gnuplot-py==1.8
h5py==2.2.1
html5lib==0.999
httplib2==0.8
ipython==1.2.1
Jinja2==2.7.2
joblib==0.7.1
lockfile==0.8
logilab-common==0.61.0
lxml==3.3.3
MACS==1.4.2
Markdown==2.6.5
MarkupSafe==0.18
matplotlib==1.3.1
mercurial==2.8.2
mpi4py==1.3.1
MySQL-python==1.2.3
natsort==3.5.1
netifaces==0.8
networkx==1.11
nose==1.3.1
numexpr==2.2.2
numpy==1.8.2
oauthlib==0.6.1
oneconf==0.3.7.14.4.1
openpyxl==1.7.0
PAM==0.4.2
pandas==0.13.1
patsy==0.2.1
pep8==1.4.6
pexpect==3.1
Pillow==2.3.0
piston-mini-client==0.7.5
prettytable==0.7.2
psutil==1.2.1
pycrypto==2.6.1
pycryptopp==0.6.0.1206569328141510525648634803928199668821045408958
pycups==1.9.66
pycurl==7.19.3
pydna==1.0.0
pyflakes==0.8.1
Pygments==1.6
pygobject==3.12.0
pylint==1.1.0
pynast==1.2.2
pyOpenSSL==0.13
pyparsing==2.0.1
pyqi==0.3.2
pyserial==2.6
pysmbc==1.0.14.1
pysqlite==2.6.3
python-apt===0.9.3.5ubuntu2
python-dateutil==1.5
python-debian===0.1.21-nmu2ubuntu2
pytz==2012rc0
pyxdg==0.25
pyzmq==14.0.1
qcli==0.1.0
qiime-default-reference==0.1.1
qreator==13.5.3
qrencode==1.1
reportlab==3.0
requests==2.2.1
roman==2.0.0
rope==0.9.2
rpy==1.0.3
rpy2==2.6.0
scikit-bio==0.2.3
scipy==0.13.3
sessioninstaller==0.0.0
simplegeneric==0.8.1
simplejson==3.3.1
singledispatch==3.4.0.2
six==1.5.2
software-center-aptd-plugins==0.0.0
Sphinx==1.2.2
spyder==2.2.5
ssh-import-id==3.21
statsmodels==0.5.0
system-service==0.1.6
tables==3.1.1
Twisted-Core==13.2.0
Twisted-Web==13.2.0
unity-scope-bio-linux==0.3.0
urllib3==1.7.1
virtualenv==14.0.6
vobject==0.8.1rc0
weblogo==3.3
xlrd==0.9.2
xlwt==0.7.5
zope.interface==4.0.5
Message has been deleted
NRW
Mar 8, 2016, 11:47:47 AM3/8/16
to pydna
Upgraded ipython, that that got things working! Thanks so much for your help, and for a great module!
On Tuesday, March 8, 2016 at 11:37:06 AM UTC-5, Björn Johansson wrote:
Björn Johansson
Mar 8, 2016, 12:15:55 PM3/8/16
to pydna
glad you got it running, feedback and testing is always welcome.
/bjorn
Reply all
Reply to author
Forward
0 new messages