pydna

Hi all, Release of 6.0.0 on the horizon. See also the issues on GitHub for pydna. I think this group

Hi all, This version has a couple of deep bugs around the handling of features. Anyone using pydna

Long overdue, see the release info on github for more information.

https://www.anaconda.com/blog/why-is-so-much-cloning-documentation-wrong

Hi, sorry for not checking back in a while. Did you solve your problem? On Monday, September 27, 2021

Hi, I am grateful for your support. Please accept my deepest thanks. That's worked for me too. On

The new version works only with biopython 1.79 and hopefully newer. If you use biopython 1.78 or

Great. That's worked. Thank you. On Thursday, June 10, 2021 at 11:03:22 AM UTC-7 pydna wrote:

Dear Dr. Björn Johansson, I appreciate your help so much. I look forward to hearing and learning from

Hi all, there is a new pydna 4.0.0a2 version. This has a new gel function that is less advanced but

Hi all and sorry for the delay in getting a new version out. Most important fix is removing

Hi, thanks for your interest in pydna. There is not anything specific regarding gateway cloning in

Created a pull request with the changes:https://github.com/BjornFJohansson/pydna/pulls This was my

Hi, I use Spyder myself, so I am not sure how the atom or Sublime Text Editor works. How did you

great! look out for a new release within days to fix this! /bjorn On Thursday, October 24, 2019 at 2:

Hi all, There is a new version 3.0.1 with backwards breaking changes, especially for the assembly

Hi, pydna can be used for many different things. What would you like to do? I have a student who will

Hi Many Thanks. Regards Sam On Thursday, February 28, 2019 at 6:26:03 PM UTC, Björn Johansson wrote:

Hi, I am happy to hear that you consider pydna useful. I developed pydna as a way to document genetic

Was this fixed for you? I am working on a new release where I try to get complete test coverage. I am

Hi that looks like a brute force approach, I though about it and came up with a way to use the

Please have a look at the 1.2.0 release. It does not have the import statements removed yet, this

I made this based on Mark Budde's code: def find_subsequence(s, subs): if s.linear: s = str(s.seq

Hi, There is a new version on pypi and on anaconda.org (1.1.4). There are some consolidation among

Hi Bjorn, yes, the code I linked to is from a javascript file linked from the Q5 Ta calculator page (

Hi, I dont know if you still need it , but pydna now has functionality for gel electrophoresis. This

Hi all, I know I havent written here for a long time, I have mostly interacted with pydna users

Hi, You probably need to download the whole genome (NC_000913.3) in order to have access to the

glad you got it running, feedback and testing is always welcome. /bjorn On Tuesday, March 8, 2016 at

Hi all, see the publication in BMC bioinformatics describing pydna. /bjorn