Hello,
I received the attached error when trying to run the pyclone code. I did not know the minor and major and minor copy number so I made up the values as per the selection below. I did not know where to indicate --prior in this case.
I have had the run up for awhile and this is the only thing is has shown. Let me know if anyone can please help.
- Nadia
If you do not major and minor copy number information you should set the minor copy number to 0, and the major copy number to the predicted total copy number. If you do this make sure to use the total_copy_number for the --prior
flag of the build_mutations_file
, setup_analysis
and run_analysis_pipeline
commands.