Came across the same issue when updating my Ubuntu 16.04 to 16.08. What did you edit exactly in the java.security file ?
#jdk.tls.disabledAlgorithms=MD5, SSLv3, DSA, RSA keySize < 2048
jdk.tls.disabledAlgorithms=SSLv3, TLSv1, TLSv1.1, RC4, DES, MD5withRSA, \
DH keySize < 1024, EC keySize < 224, 3DES_EDE_CBC, anon, NULL, \
include jdk.disabled.namedCurves