Jira (PDB-4709) PuppetDB 6.10 schema migration failed

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Iain Buclaw (Jira)

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May 4, 2020, 4:36:03 AM5/4/20
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Iain Buclaw commented on Bug PDB-4709
 
Re: PuppetDB 6.10 schema migration failed

Full report:

{:clojure.main/message
 
 "Execution error (IllegalStateException) at jdk.internal.reflect.NativeConstructorAccessorImpl/newInstance0 (NativeConstructorAccessorImpl.java:-2).\nYour PuppetDB database contains a schema migration numbered 1, but this version of PuppetDB does not recognize that version.\n",
 
 :clojure.main/triage
 
 {:clojure.error/class java.lang.IllegalStateException,
 
  :clojure.error/line -2,
 
  :clojure.error/cause
 
  "Your PuppetDB database contains a schema migration numbered 1, but this version of PuppetDB does not recognize that version.",
 
  :clojure.error/symbol
 
  jdk.internal.reflect.NativeConstructorAccessorImpl/newInstance0,
 
  :clojure.error/source "NativeConstructorAccessorImpl.java",
 
  :clojure.error/phase :execution},
 
 :clojure.main/trace
 
 {:via
 
  [{:type java.lang.IllegalStateException,
 
    :message
 
    "Your PuppetDB database contains a schema migration numbered 1, but this version of PuppetDB does not recognize that version.",
 
    :at
 
    [jdk.internal.reflect.NativeConstructorAccessorImpl
 
     newInstance0
 
     "NativeConstructorAccessorImpl.java"
 
     -2]}],
 
  :trace
 
  [[jdk.internal.reflect.NativeConstructorAccessorImpl
 
    newInstance0
 
    "NativeConstructorAccessorImpl.java"
 
    -2]
 
   [jdk.internal.reflect.NativeConstructorAccessorImpl
 
    newInstance
 
    "NativeConstructorAccessorImpl.java"
 
    62]
 
   [jdk.internal.reflect.DelegatingConstructorAccessorImpl
 
    newInstance
 
    "DelegatingConstructorAccessorImpl.java"
 
    45]
 
   [java.lang.reflect.Constructor newInstance "Constructor.java" 490]
 
   [clojure.lang.Reflector invokeConstructor "Reflector.java" 305]
 
   [puppetlabs.puppetdb.scf.migrate$require_valid_schema
 
    invokeStatic
 
    "migrate.clj"
 
    2085]
 
   [puppetlabs.puppetdb.scf.migrate$require_valid_schema
 
    invoke
 
    "migrate.clj"
 
    2066]
 
   [puppetlabs.puppetdb.scf.migrate$update_schema$fn__35940
 
    invoke
 
    "migrate.clj"
 
    2225]
 
   [clojure.java.jdbc$db_transaction_STAR_ invokeStatic "jdbc.clj" 771]
 
   [clojure.java.jdbc$db_transaction_STAR_ invoke "jdbc.clj" 741]
 
   [puppetlabs.puppetdb.scf.migrate$update_schema
 
    invokeStatic
 
    "migrate.clj"
 
    2220]
 
   [puppetlabs.puppetdb.scf.migrate$update_schema
 
    invoke
 
    "migrate.clj"
 
    2186]
 
   [puppetlabs.puppetdb.scf.migrate$initialize_schema
 
    invokeStatic
 
    "migrate.clj"
 
    2258]
 
   [puppetlabs.puppetdb.scf.migrate$initialize_schema
 
    invoke
 
    "migrate.clj"
 
    2251]
 
   [puppetlabs.puppetdb.scf.migrate$initialize_schema
 
    invokeStatic
 
    "migrate.clj"
 
    2255]
 
   [puppetlabs.puppetdb.scf.migrate$initialize_schema
 
    invoke
 
    "migrate.clj"
 
    2251]
 
   [puppetlabs.puppetdb.cli.services$prep_db
 
    invokeStatic
 
    "services.clj"
 
    423]
 
   [puppetlabs.puppetdb.cli.services$prep_db invoke "services.clj" 416]
 
   [puppetlabs.puppetdb.cli.services$init_with_db$fn__36211
 
    invoke
 
    "services.clj"
 
    475]
 
   [puppetlabs.puppetdb.cli.services$init_with_db
 
    invokeStatic
 
    "services.clj"
 
    472]
 
   [puppetlabs.puppetdb.cli.services$init_with_db
 
    invoke
 
    "services.clj"
 
    439]
 
   [puppetlabs.puppetdb.cli.services$start_puppetdb
 
    invokeStatic
 
    "services.clj"
 
    599]
 
   [puppetlabs.puppetdb.cli.services$start_puppetdb
 
    invoke
 
    "services.clj"
 
    576]
 
   [puppetlabs.puppetdb.cli.services$start_puppetdb_or_shutdown$fn__36262
 
    invoke
 
    "services.clj"
 
    695]
 
   [puppetlabs.puppetdb.cli.services$start_puppetdb_or_shutdown
 
    invokeStatic
 
    "services.clj"
 
    693]
 
   [puppetlabs.puppetdb.cli.services$start_puppetdb_or_shutdown
 
    invoke
 
    "services.clj"
 
    688]
 
   [puppetlabs.puppetdb.cli.services$reify__36374$service_fnk__19145__auto___positional$reify__36385
 
    start
 
    "services.clj"
 
    790]
 
   [puppetlabs.trapperkeeper.services$fn__18982$G__18963__18985
 
    invoke
 
    "services.clj"
 
    9]
 
   [puppetlabs.trapperkeeper.services$fn__18982$G__18962__18989
 
    invoke
 
    "services.clj"
 
    9]
 
   [puppetlabs.trapperkeeper.internal$fn__19477$run_lifecycle_fn_BANG___19484$fn__19485
 
    invoke
 
    "internal.clj"
 
    196]
 
   [puppetlabs.trapperkeeper.internal$fn__19477$run_lifecycle_fn_BANG___19484
 
    invoke
 
    "internal.clj"
 
    179]
 
   [puppetlabs.trapperkeeper.internal$fn__19506$run_lifecycle_fns__19511$fn__19512
 
    invoke
 
    "internal.clj"
 
    229]
 
   [puppetlabs.trapperkeeper.internal$fn__19506$run_lifecycle_fns__19511
 
    invoke
 
    "internal.clj"
 
    206]
 
   [puppetlabs.trapperkeeper.internal$fn__20122$build_app_STAR___20131$fn$reify__20143
 
    start
 
    "internal.clj"
 
    605]
 
   [puppetlabs.trapperkeeper.internal$fn__20170$boot_services_for_app_STAR__STAR___20177$fn__20178$fn__20180
 
    invoke
 
    "internal.clj"
 
    631]
 
   [puppetlabs.trapperkeeper.internal$fn__20170$boot_services_for_app_STAR__STAR___20177$fn__20178
 
    invoke
 
    "internal.clj"
 
    629]
 
   [puppetlabs.trapperkeeper.internal$fn__20170$boot_services_for_app_STAR__STAR___20177
 
    invoke
 
    "internal.clj"
 
    623]
 
   [clojure.core$partial$fn__5841 invoke "core.clj" 2630]
 
   [puppetlabs.trapperkeeper.internal$fn__19551$initialize_lifecycle_worker__19562$fn__19563$fn__19713$state_machine__12280__auto____19738$fn__19741
 
    invoke
 
    "internal.clj"
 
    249]
 
   [puppetlabs.trapperkeeper.internal$fn__19551$initialize_lifecycle_worker__19562$fn__19563$fn__19713$state_machine__12280__auto____19738
 
    invoke
 
    "internal.clj"
 
    249]
 
   [clojure.core.async.impl.ioc_macros$run_state_machine
 
    invokeStatic
 
    "ioc_macros.clj"
 
    973]
 
   [clojure.core.async.impl.ioc_macros$run_state_machine
 
    invoke
 
    "ioc_macros.clj"
 
    972]
 
   [clojure.core.async.impl.ioc_macros$run_state_machine_wrapped
 
    invokeStatic
 
    "ioc_macros.clj"
 
    977]
 
   [clojure.core.async.impl.ioc_macros$run_state_machine_wrapped
 
    invoke
 
    "ioc_macros.clj"
 
    975]
 
   [clojure.core.async$ioc_alts_BANG_$fn__12495 invoke "async.clj" 384]
 
   [clojure.core.async$do_alts$fn__12435$fn__12438
 
    invoke
 
    "async.clj"
 
    253]
 
   [clojure.core.async.impl.channels.ManyToManyChannel$fn__7099$fn__7100
 
    invoke
 
    "channels.clj"
 
    95]
 
   [clojure.lang.AFn run "AFn.java" 22]
 
   [java.util.concurrent.ThreadPoolExecutor
 
    runWorker
 
    "ThreadPoolExecutor.java"
 
    1128]
 
   [java.util.concurrent.ThreadPoolExecutor$Worker
 
    run
 
    "ThreadPoolExecutor.java"
 
    628]
 
   [java.lang.Thread run "Thread.java" 834]],
 
  :cause
 
  "Your PuppetDB database contains a schema migration numbered 1, but this version of PuppetDB does not recognize that version."}}

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Iain Buclaw (Jira)

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May 4, 2020, 4:36:03 AM5/4/20
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Iain Buclaw created an issue
 
PuppetDB / Bug PDB-4709
Issue Type: Bug Bug
Affects Versions: PDB 6.10.0
Assignee: Unassigned
Components: PuppetDB
Created: 2020/05/04 1:35 AM
Priority: High High
Reporter: Iain Buclaw

Service fails to start after 6.9.1 -> 6.10.0 upgrade.

WARNING: An illegal reflective access operation has occurred
 
WARNING: Illegal reflective access by dynapath.defaults$fn__20897$fn__20898 (file:/opt/puppetlabs/server/apps/puppetdb/puppetdb.jar) to method java.net.URLClassLoader.addURL(java.net.URL)
 
WARNING: Please consider reporting this to the maintainers of dynapath.defaults$fn__20897$fn__20898
 
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
 
WARNING: All illegal access operations will be denied in a future release
 
The [database] classname config option has been retired and will be ignored.
 
The [database] conn-keep-alive config option has been retired and will be ignored.
 
The [database] log-slow-statements config option has been retired and will be ignored.
 
The [database] subprotocol config option has been retired and will be ignored.
 
The [read-database] classname config option has been retired and will be ignored.
 
The [read-database] conn-keep-alive config option has been retired and will be ignored.
 
The [read-database] log-slow-statements config option has been retired and will be ignored.
 
The [read-database] subprotocol config option has been retired and will be ignored.
 
The [database] classname config option has been retired and will be ignored.
 
The [database] conn-keep-alive config option has been retired and will be ignored.
 
The [database] log-slow-statements config option has been retired and will be ignored.
 
The [database] subprotocol config option has been retired and will be ignored.
 
The [read-database] classname config option has been retired and will be ignored.
 
The [read-database] conn-keep-alive config option has been retired and will be ignored.
 
The [read-database] log-slow-statements config option has been retired and will be ignored.
 
The [read-database] subprotocol config option has been retired and will be ignored.
 
Execution error (IllegalStateException) at jdk.internal.reflect.NativeConstructorAccessorImpl/newInstance0 (NativeConstructorAccessorImpl.java:-2).
 
Your PuppetDB database contains a schema migration numbered 1, but this version of PuppetDB does not recognize that version.
 
Full report at:
 
/tmp/clojure-14479181673949144443.edn

Matt Dainty (Jira)

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May 4, 2020, 5:31:04 AM5/4/20
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Matt Dainty commented on Bug PDB-4709
 
Re: PuppetDB 6.10 schema migration failed

I noticed a similar error when PuppetDB was upgraded from 5.2.13 to 5.2.14 over the weekend, I saw the same "Your PuppetDB database contains a schema migration numbered 1, but..." error message and PuppetDB wouldn't start. Downgrading back to 5.2.13 got things working again. I am going to investigate and see if I can see anything in the logs.

Austin Blatt (Jira)

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May 5, 2020, 2:02:03 PM5/5/20
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Austin Blatt updated an issue
 
Change By: Austin Blatt
Affects Version/s: PDB 5.2.14

Austin Blatt (Jira)

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May 5, 2020, 2:02:03 PM5/5/20
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Austin Blatt assigned an issue to Rob Browning
Change By: Austin Blatt
Assignee: Rob Browning

Austin Blatt (Jira)

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May 5, 2020, 2:02:04 PM5/5/20
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Austin Blatt updated an issue
Change By: Austin Blatt
Fix Version/s: PDB 6.10.1
Fix Version/s: PDB 5.2.15

Austin Blatt (Jira)

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May 5, 2020, 2:09:03 PM5/5/20
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Austin Blatt updated an issue
Change By: Austin Blatt
Release Notes: Bug Fix
Release Notes Summary: Fixed an issue that would cause PuppetDB to fail to start on a database that had migrations from before PuppetDB 4.0.0.

Austin Blatt (Jira)

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May 5, 2020, 2:09:04 PM5/5/20
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Austin Blatt commented on Bug PDB-4709
 
Re: PuppetDB 6.10 schema migration failed

The issue you're running into is a recent change made PuppetDB not recognize migrations from before PuppetDB 4.0.0, so if you've been running this PuppetDB server since before 4.0.0 it will think there's something wrong with the schema_migrations table and fail to start.

We are working on a fix and aim to release versions 5.2.15 and 6.10.1 to fix this as soon as possible.
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