Do you hav PTGui pro? If yes, you can use the batch stitcher to do
multiple images.
Go to Tools -> Batch Builder
Select "Detect Panoramas" to open the Detect Panorama Settings
Choose Method: "Multiple panoramas per folder..."
Choose your Source folder (where the images are).
If you have other files in that folder, set an Image file extension
Set "Images per panorama" to 1
Click "Detect Panoramas" to go back to Batch Builder
Your images should now be loaded, one per row.
Choose your template at "Use template"
Select "will not run 'Align Images'..."
Enable "Send the generated Batch List to the Batch Stitcher"
Click "Generate projects"
That should be it.
--
Erik Krause
http://www.erik-krause.de