Hello Chris,
Before I will try to answer your question I need to be sure that I
understand your setup.
You have a motor drive that is continuously rotating with a cropped
sensor camera and a 10.5 lens.
I assume that to cover zenith you have tilted the camera approx. 15
degree or so and you shoot 6 images with a varying yaw in approx. 6
seconds.
If there is little wind then you have a chance that you can get away
with this setup but in stormy weather you will have problems.
I will explain why.
You want to shoot the sky with moving clouds, between the first and
the last shot there is a time difference of 6 seconds.
Because you don't shoot with a high precision system you have to set
PTGui to align the images with automatically placed CP's.
When the clouds are moving fast there will be lots of alignment
errors, especially between the first and the last shot.
The result will be a bunch of panos that will be jump from left to
right and shrink and expand.
Please keep in mind that even a very small jump between the frames
(=pamos) of only 2 or 3 pixels is very annoying.
If you don't mind the left/right jumping and the shrinking and
expansion of the frames then you can easily create individual
templates for each pano with PTGui's Batch Builder.
First you create a projekt template with the proper lens params, then
you set in the Projekt tab file that PTgui have to optimize the pano
and in the Optimize tab you disable all settings except for Yaw, Pitch
& Roll.
I theory you could only optimize for Yaw if your setup is rock solid
and without any wobbling of the camera.
When all other settings of the base template are right (pano size,
file format etc.) you can use the Batch builder to create the
individual templates based on your projekt template and then sent all
the templates to PTGui's Batch Stitcher. After a very long time your
panos are ready and then you can convert them to a panoramic timelapse
video movies, f.e. with Pano2VR.
I have some experience in making timelapses of the sky and I stopped
converting them to panoramic video because the extra processing time
of the process to make panoramic video isn't worth for me the efforts
so now I make "simple" and not very interactive movies.
To see what I mean you can take a look at a posting about this subject
on the Nodal Ninja forum.
Its easy to shoot, its fast and the full circular view gives an extra
dimension to the viewing experience (btw, go for the 700px version).
http://nodalninja.com/forum/index.php?topic=860.0
Success,
Wim