Hello Colin,
I gave your images a try. First I wanted to use the native focal length
(24mm) with "Align to grid" for a first alignment, but this didn't work
out since it would have resulted in a panorama wider than 360°, which
PTGui refuses to stitch.
I choose the middle image as anchor, disabling it from all optimizations
on Optimizer tab. I've set the maximum control point numbers to pretty
high values on Tools -> Options -> Control Point Generator. Next I set
the focal length to 100000mm and asked PTGui to generate control points.
This worked out almost ok, only the rightmost column was a bit lopsided.
A few additional control points between images 22 and 23 solved that,
images 46 and 69, which didn't have control points with their left
neighbors also dropped in place. For safety I generated some between
those images using the "Generate Control Points Here" feature. After
re-optimizing (F5), I ran "Delete worst control points" from Control
Points menu. You can see the rest of the settings in the attached
project file.
A few observations:
You used manual exposure mode, which is perfect, but you also used
automatic white balance, which gives the control point generator
additional problems. Exposure time changed from 0.5s to 0.6s between
images 48 and 49, which is also less than optimal.