not saving csv files (inconsistently)

[Anneke Haddad]

Dear all,

I have a task programmed in Coder 1.83.03 running on Mac OSX.

My student tested her first two participants with this task yesterday. Unfortunately Psychopy did not save a csv or psydat file for either participant - only a log file (which for the second participant at least looks truncated). She says that for the first participant, there were no error messages and for the second, right at the end of the task (when the final 'thank you' screen was displayed), she hit escape because the task seemed to have frozen; psychopy then reported a 'fatal error' (I'm afraid she wasn't more specific than that).

We have never had this problem before. In developing and testing the experiment, we always got csv and psydat files as well as log file. And I have thus far been unable to replicate the problem on my office machine or the lab machine. 

Things I have investigated:

- Previous reports of similar problems on the list seem to relate to use of non-ASCII characters (which we are not using) or hitting the red X to abort the experiment (which my student did not do).

- The participant numbers were in the 100s, whereas we only used single digit participant numbers when testing the task. This shouldn't make a difference as it ought to be simply saved as an integer. There is a line of code that picks a particular trial order based on the participant number modulo 8 thus:

thisParticipantTrialOrder = trialOrders[(int(expInfo['participant'])-1) % 8]

...but I don't see why that should cause problems with high participant numbers - and besides, I have since tested the task with stupidly high participant numbers and had no problems.

- Is it possible that there is some computer setting (not in psychopy) that is different when my student logs into the lab machine compared to when I log into the lab machine that would cause this behaviour? I wouldn't know what setting(s) to check though.

Any hints or ideas of what I could look for to check why this occurred and prevent it from happening again would be much appreciated.

Thanks,

Anneke

[Michael MacAskill]

Hi Anneke,

> We have never had this problem before. In developing and testing the experiment, we always got csv and psydat files as well as log file. And I have thus far been unable to replicate the problem on my office machine or the lab machine.

That's the problem right there. It points to the student, or, as you note, an issue specific to that student's configuration when logged in

> psychopy then reported a 'fatal error' (I'm afraid she wasn't more specific than that).

Doesn't give us much to go on…

> ...but I don't see why that should cause problems with high participant numbers - and besides, I have since tested the task with stupidly high participant numbers and had no problems.

Agreed, seems like a red herring.

> - Is it possible that there is some computer setting (not in psychopy) that is different when my student logs into the lab machine compared to when I log into the lab machine that would cause this behaviour? I wouldn't know what setting(s) to check though.

Differing permissions to write data files in specific locations could be problematic. You'd need to do testing logged in as the student to see if this is the issue.

Remotely, I don't think we can offer many other suggestions with the given information. My only recommendation is for you to continue to try to replicate the issues and report any possible error message, under exactly the same conditions as the student uses, while verifying her procedures. (To be honest, we have had reports of no data being written before, which did end up being due to the red "stop" button being used, despite initial definite protestations that hadn't occurred… )

Hope this gets sorted soon,

Mike

--
Michael R. MacAskill, PhD 66 Stewart St
Research Director, Christchurch 8011
New Zealand Brain Research Institute NEW ZEALAND

Senior Research Fellow, michael....@nzbri.org
Te Whare Wānanga o Otāgo, Otautahi Ph: +64 3 3786 072
University of Otago, Christchurch http://www.nzbri.org/macaskill

[Richard Höchenberger]

Hi Anneke,

On Thu, Jan 28, 2016 at 5:32 PM, Anneke Haddad <anneke...@gmail.com> wrote:
> And I have thus far been unable to replicate the problem on my office
> machine or the lab machine.

did your student by any chance exit all experiments by pressing the escape key?

Richard

[Anneke Haddad]

Hi Richard and Mike

Thanks for your replies. 

did your student by any chance exit all experiments by pressing the escape key?

She says that she did hit esc for the second participant but not the first. However, I get a csv file even when I hit esc which contains data for all the trials up to that point.

I don't think she could have pressed the red 'cancel' button as the task runs full screen and there is only one monitor, so it wouldn't have been accessible to her whilst the task was running.

I will do some further investigating (with a student log-in) and see if I can find any more clues as to what is going on.

Thanks again for your help.

Anneke

[Anneke Haddad]

So even using a student log-in, we have only been able to reproduce the problem of non-saving of csv files once (out of about 15 or 20 attempts), which is pretty frustrating.

The one time it did fail to save, Psychopy produced an error message saying "Fatal Python error: (pygame parachute) Segmentation Fault"

Interestingly, we also get the same error message when running the task off a USB rather than the desktop, but at the beginning of the task rather than the end (causing Psychopy to quit out of the task), and not consistently, which is rather puzzling. We've been unable to work out a pattern to when it happens.

Strangely (no idea if it's related), hitting 'esc' (sometimes) doesn't quit the task, but rather causes Psychopy to apparently freeze. Hitting 'cmd-alt-esc' quits however, even from the 'frozen' state. There don't appear to be any problematic outcomes from hitting cmd-alt-esc (e.g., we still get the csv file), but I'm puzzled as to why this would be necessary and why 'esc' doesn't work. The code was originally compiled from Builder and then modified, so it has the lines:

#check for quit (the Esc key)

if endExpNow or event.getKeys(keyList=["escape"]):

core.quit()

... in each routine.

Interestingly, there was one occasion when the task ran through right to the end and appeared to quit properly, but the red 'cancel' button was still available. Why would that happen?

I'm completely in the dark as to what is going on here, so if anyone has any clues about anything else we could try, I'd be grateful.

System details, in case relevant

OSX 10.10.5

Processor 2.5GHz Intel core i5

Memory 4GB 1333 MHz DDR3

Graphics AMD Radeon HD 6750M 512 MB

[Michael MacAskill]

Hi Anneke,

> Strangely (no idea if it's related), hitting 'esc' (sometimes) doesn't quit the task, but rather causes Psychopy to apparently freeze. Hitting 'cmd-alt-esc' quits however, even from the 'frozen' state. There don't appear to be any problematic outcomes from hitting cmd-alt-esc (e.g., we still get the csv file), but I'm puzzled as to why this would be necessary and why 'esc' doesn't work. The code was originally compiled from Builder and then modified, so it has the lines:

That could definitely be the problem. Is there a reason you are doing this rather than putting code into a Builder Code component? That has two very strong advantages:
— you get to keep working in the graphical Builder environment if you need to make changes.
— you know the code will be inserted in the correct place and at the appropriate indentation level.

For example:

> #check for quit (the Esc key)
> if endExpNow or event.getKeys(keyList=["escape"]):
> core.quit()

[I'm guessing the lack of indentation before "core.quit()" here is just a copy-paste error, or sell the experiment would always quit at the end of the first trial.] There is also the issue of if the entire snippet is indented to occur at the appropriate place.

There *could* be a problem here with checking for the escape key but it is hard to tell without seeing the code in the wider context of the trial. There is a common issue when people call event.getKeys() more than once per cycle. I don't know where this code sits. But getKeys() just checks if a key has been pressed since the last time this function was called. So if there has already been a call to getKeys() earlier in the cycle (and escape was pressed at that stage), that key press will be lost if the keyboard is checked again and it will seem like escape wasn't pushed at all.

The way to get around this is to store the result of the getKeys call, and/or respond to immediately. e.g. let's say you have a loop which checks the keyboard every screen refresh, then the pseudo code would look like this:

while True:
stim_1.draw()
win.flip()

response = event.getKeys(keyList=['y', 'n', 'escape'])

if 'escape' in response: # deal with the consequence now:
endExpNow = True # or simply call core.quit()
else:
# do other stuff

if endExpNow: ### DON'T check the keyboard again or the escape will be lost
core.quit()

Or alternatively, in your current structure:

while True:
stim_1.draw()
win.flip()

response = event.getKeys(keyList=['y', 'n', 'escape'])

# do some stuff

if endExpNow or 'escape' in response: ### check the STORED response
core.quit()

> Interestingly, there was one occasion when the task ran through right to the end and appeared to quit properly, but the red 'cancel' button was still available. Why would that happen?
>
> I'm completely in the dark as to what is going on here, so if anyone has any clues about anything else we could try, I'd be grateful.

That could be related to your custom code. Have you started some process or created some object that remain in existence, and won't be cleared by the standard PsychoPy quite procedure?

Regards,

Michael

[Anneke Haddad]

Thanks for your reply, Michael. I'll certainly go through the code again carefully and check whether I can see any errors.  However, the reason I don't think it's a problem with the code is that we don't have any issues with running the experiment on other machines. Indeed, I've just set it up to run on a Windows 7 laptop and it seems to be fine (saves csv files and hitting esc gives expected behaviour). Also, even when hitting esc gives the unexpected freezing behaviour on the lab machine (Mac), we still get a csv file.

I'm more concerned about the error message "Fatal Python error: (pygame parachute) Segmentation Fault" which seems to be more consistently related to whether or not we get the csv file i.e., this message follows when Psychopy either fails to start the experiment at all, or else runs the experiment but fails to save the csv file. Do you have any clues as to what could be causing this?

Thanks again for your input.

Anneke

p.s., The reason I've ended up using Coder rather than Builder is that this is a modified version of another task which was too complicated to design in Builder (due to having multiple monitors with different stimuli). At the time, it seemed simpler to modify the code to create this experiment rather than start from scratch in Builder. However, I can certainly see why using Builder has significant advantages, and I am wondering if it would be worth investing the time in switching over to Builder for this particular task, given that we are having these unpredictable problems.

[Anneke Haddad]

So, I rewrote the task in Builder, which I hoped would solve any issues that were related to my code. The new Builder task seemed to be running fine, but my student has just reported that she has once again failed to get a csv file for her most recent participant.

She says that when the participant got to the end of the task, she got the spinning beachball and then a pop-up window saying 'Psychopy quit unexpectedly'. I have attached a screenshot of this error message and the full text of the message is below.

Interestingly, this time she says she didn't get the message 'Fatal Python error: (pygame parachute) Segmentation Fault" which I had thought was consistently related to the non-saving of the csv file - perhaps I was wrong about that!

Michael, you asked if I started some process or created some object that remain in existence, and won't be cleared by the standard PsychoPy quit procedure - I don't know what sort of process/object this would be - perhaps it is relevant that the task uses sound files and a movie file? But surely those would be cleared by the standard quit procedure that is called by Builder at the end of the experiment?

Thanks,

Anneke

Process:               python [998]

Path:                  /Applications/PsychoPy2_1_83_03_Local.app/Contents/MacOS/python

Identifier:            org.psychopy.PsychoPy2

Version:               1.83.03 (0.0.0)

Code Type:             X86-64 (Native)

Parent Process:        PsychoPy2 [708]

Responsible:           PsychoPy2 [708]

User ID:               401609949

Date/Time:             2016-02-03 13:16:34.696 +0000

OS Version:            Mac OS X 10.10.5 (14F1509)

Report Version:        11

Anonymous UUID:        07DE6BB4-42DF-8761-CE2F-6B0CA73C9469

Time Awake Since Boot: 5500 seconds

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Exception Type:        EXC_BAD_ACCESS (SIGABRT)

Exception Codes:       EXC_I386_GPFLT

Application Specific Information:

abort() called

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Thread 0 crashed with X86 Thread State (64-bit):

  rax: 0x0000000000000000  rbx: 0x0000000000000006  rcx: 0x00007fff5fbfe5e8  rdx: 0x0000000000000000

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  r12: 0x00007ffffffffff8  r13: 0x0000000000000000  r14: 0x00007fff77d53300  r15: 0x7000000010eda3e4

  rip: 0x00007fff8aec7286  rfl: 0x0000000000000206  cr2: 0x00007fff77895fd8

  

Logical CPU:     0

Error Code:      0x02000148

Trap Number:     133

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    0x7fff920c8000 -     0x7fff920cafff  com.apple.loginsupport (1.0 - 1) <DAAD7013-A19D-3858-BFF7-DE1DAF664401> /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport

    0x7fff920cb000 -     0x7fff920d3fff  libsystem_dnssd.dylib (576.50.2) <9EC5AF92-D0D2-3BDE-92B6-D3730D3865C8> /usr/lib/system/libsystem_dnssd.dylib

    0x7fff920d4000 -     0x7fff921edffb  com.apple.CoreText (454.11 - 454.11) <7E5228C8-8657-3B6C-B3A4-98B79A3041EA> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText

    0x7fff921ee000 -     0x7fff921f4ff7  libsystem_networkextension.dylib (167.40.3) <BA58B30B-8377-3B0A-8AE3-4F84021D9D4E> /usr/lib/system/libsystem_networkextension.dylib

    0x7fff922a2000 -     0x7fff922a5ff7  com.apple.Mangrove (1.0 - 1) <6326024D-5C8D-3F59-9468-ACA1E01BC70C> /System/Library/PrivateFrameworks/Mangrove.framework/Versions/A/Mangrove

    0x7fff9234c000 -     0x7fff923bbfff  com.apple.SearchKit (1.4.0 - 1.4.0) <80883BD1-C9BA-3794-A20E-476F94DD89A9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit

    0x7fff923bc000 -     0x7fff923d8fff  com.apple.GenerationalStorage (2.0 - 209.11) <9FF8DD11-25FB-3047-A5BF-9415339B3EEC> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage

    0x7fff92697000 -     0x7fff92846fff  GLEngine (11.1.6) <8AD12D78-85C6-3B9C-BB0A-153A66236A56> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine

    0x7fff92847000 -     0x7fff9284cff7  libmacho.dylib (862) <126CA2ED-DE91-308F-8881-B9DAEC3C63B6> /usr/lib/system/libmacho.dylib

    0x7fff929af000 -     0x7fff92a85ff3  com.apple.DiskImagesFramework (10.10.5 - 398) <37291661-BCB2-3F95-B446-5E5DB1D1E472> /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages

    0x7fff92a9b000 -     0x7fff92dceff7  libmecabra.dylib (666.7) <0ED8AE5E-7A5B-34A6-A2EE-2B852E60E1E2> /usr/lib/libmecabra.dylib

    0x7fff92dcf000 -     0x7fff92e1cff7  com.apple.print.framework.PrintCore (10.3 - 451.1) <DE992474-0841-38A1-B4F6-46D653E454D5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore

    0x7fff92e89000 -     0x7fff92e8bff3  com.apple.SafariServices.framework (10601 - 10601.3.9) <B15583E0-9E77-3BDD-92F2-486E57C3DCBB> /System/Library/PrivateFrameworks/SafariServices.framework/Versions/A/SafariServices

    0x7fff92e8f000 -     0x7fff92e93fff  com.apple.IOAccelerator (156.16 - 156.16) <12DE1474-4B2A-3D7D-ACF9-DDAF66A6936A> /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator

    0x7fff92e94000 -     0x7fff92e9bfff  com.apple.NetFS (6.0 - 4.0) <C263C8F8-F284-3101-AC82-A97A81716063> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS

    0x7fff92ee1000 -     0x7fff92ee9ffb  libcopyfile.dylib (118.1.2) <0C68D3A6-ACDD-3EF3-991A-CC82C32AB836> /usr/lib/system/libcopyfile.dylib

    0x7fff92ef0000 -     0x7fff92f3fff7  libstdc++.6.dylib (104.1) <803F6AC8-87DC-3E24-9E80-729B551F6FFF> /usr/lib/libstdc++.6.dylib

    0x7fff92f40000 -     0x7fff92f44fff  libpam.2.dylib (20) <E805398D-9A92-31F8-8005-8DC188BD8B6E> /usr/lib/libpam.2.dylib

    0x7fff92f45000 -     0x7fff92f48ff7  libdyld.dylib (353.2.3) <CFBBE540-D503-3AFC-B5D6-644F1E69949B> /usr/lib/system/libdyld.dylib

    0x7fff92f49000 -     0x7fff932b4fff  com.apple.VideoToolbox (1.0 - 1562.240) <BEBDEB83-618F-38BE-B7A7-5E096B428DFA> /System/Library/Frameworks/VideoToolbox.framework/Versions/A/VideoToolbox

    0x7fff932b5000 -     0x7fff932b6fff  libsystem_secinit.dylib (18) <581DAD0F-6B63-3A48-B63B-917AF799ABAA> /usr/lib/system/libsystem_secinit.dylib

    0x7fff932b7000 -     0x7fff932dbff7  com.apple.quartzfilters (1.10.0 - 1.10.0) <1AE50F4A-0098-34E7-B24D-DF7CB94073CE> /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters

    0x7fff932dc000 -     0x7fff932f1ff7  com.apple.AppContainer (4.0 - 238.20.2) <2AA2EF49-9F38-31F6-8B08-8CC7C26F57F3> /System/Library/PrivateFrameworks/AppContainer.framework/Versions/A/AppContainer

    0x7fff9340e000 -     0x7fff93410fff  libRadiance.dylib (1241) <480E8A72-F5F9-31A4-BF63-28BAF3BB1F8E> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib

    0x7fff93411000 -     0x7fff9341afff  libsystem_pthread.dylib (105.40.1) <ACE90967-ECD0-3251-AEEB-461E3C6414F7> /usr/lib/system/libsystem_pthread.dylib

    0x7fff9341b000 -     0x7fff93424fff  libGFXShared.dylib (11.1.6) <CB24B5DA-CB17-3A0B-94E1-5A58DADC3FBD> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib

    0x7fff93444000 -     0x7fff93495fff  com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <8E6AE326-9F3E-3182-BD9E-FDF561211E2E> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio

    0x7fff934a0000 -     0x7fff934acfff  com.apple.speech.synthesis.framework (5.3.11 - 5.3.11) <DFC7FD85-F1B0-317C-8513-722570CB8FB9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis

    0x7fff934ef000 -     0x7fff9351affb  libarchive.2.dylib (30.50.1) <C140763F-5470-3302-B3E0-651B4B5930ED> /usr/lib/libarchive.2.dylib

    0x7fff9351b000 -     0x7fff93545fff  GLRendererFloat (11.1.6) <EB135987-0B93-393F-9139-CAB7F6FEBB12> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat

    0x7fff93546000 -     0x7fff93609ff7  libvMisc.dylib (516) <21497A28-8DCB-3EB8-BDAC-93C93382B0AA> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib

    0x7fff9360a000 -     0x7fff9363bff7  com.apple.ProtectedCloudStorage (1.0 - 1) <9D76F2E0-C28A-3DBC-A91F-E87888D46BF0> /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage

    0x7fff93657000 -     0x7fff9373bfff  libcrypto.0.9.8.dylib (52.40.1) <D123FC57-E2EB-3E08-A51B-6C317EA83EB5> /usr/lib/libcrypto.0.9.8.dylib

    0x7fff9373c000 -     0x7fff93b6cfff  com.apple.vision.FaceCore (3.1.6 - 3.1.6) <C3B823AA-C261-37D3-B4AC-C59CE91C8241> /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore

    0x7fff93b6d000 -     0x7fff93b88fff  com.apple.AppleVPAFramework (1.4.5 - 1.4.5) <A6421B0B-6D4D-3E64-AC61-DDB04ED7CFF0> /System/Library/PrivateFrameworks/AppleVPA.framework/Versions/A/AppleVPA

    0x7fff93ba9000 -     0x7fff93c48e27  com.apple.AppleJPEG (1.0 - 1) <6627DDD9-A8FE-3968-B23A-B6A29AA3919A> /System/Library/PrivateFrameworks/AppleJPEG.framework/Versions/A/AppleJPEG

    0x7fff942b9000 -     0x7fff942bbff7  libsystem_coreservices.dylib (9) <41B7C578-5A53-31C8-A96F-C73E030B0938> /usr/lib/system/libsystem_coreservices.dylib

    0x7fff94556000 -     0x7fff946bdffb  com.apple.audio.toolbox.AudioToolbox (1.12 - 1.12) <5678FC94-456A-3F5F-BA9A-10EB6E462997> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox

    0x7fff946be000 -     0x7fff946cdfff  com.apple.LangAnalysis (1.7.0 - 1.7.0) <D1E527E4-C561-352F-9457-E8C50232793C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis

    0x7fff946ce000 -     0x7fff94812ff7  com.apple.QTKit (7.7.3 - 2890.9) <993AF630-272B-3AE6-97A5-946C4283485A> /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit

    0x7fff94813000 -     0x7fff9487aff7  com.apple.framework.CoreWiFi (3.0 - 300.4) <19269C1D-EB29-384A-83F3-7DDDEB7D9DAD> /System/Library/PrivateFrameworks/CoreWiFi.framework/Versions/A/CoreWiFi

    0x7fff9487b000 -     0x7fff9487dfff  libCVMSPluginSupport.dylib (11.1.6) <F82BF8C4-12D3-3EAD-AEDE-533AC08AEB4A> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib

    0x7fff94ae7000 -     0x7fff94aeffff  libsystem_platform.dylib (63) <64E34079-D712-3D66-9CE2-418624A5C040> /usr/lib/system/libsystem_platform.dylib

    0x7fff94af0000 -     0x7fff94b06ff7  com.apple.CoreMediaAuthoring (2.2 - 951) <C3E7D4C1-400D-34FA-9FE1-8C68C03CE969> /System/Library/PrivateFrameworks/CoreMediaAuthoring.framework/Versions/A/CoreMediaAuthoring

    0x7fff94b07000 -     0x7fff94e0cff3  com.apple.HIToolbox (2.1.1 - 758.7) <E3129A67-BDF9-333D-9C9C-A95C8F0EF71C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox

    0x7fff94e0d000 -     0x7fff94e12fff  com.apple.DiskArbitration (2.6 - 2.6) <0DFF4D9B-2AC3-3B82-B5C5-30F4EFBD2DB9> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration

    0x7fff94e13000 -     0x7fff94e18ff7  com.apple.MediaAccessibility (1.0 - 61) <00A3E0B6-79AC-387E-B282-AADFBD5722F6> /System/Library/Frameworks/MediaAccessibility.framework/Versions/A/MediaAccessibility

    0x7fff94e19000 -     0x7fff94e41fff  libsystem_info.dylib (459.40.1) <2E16C4B3-A327-3957-9C41-143911979A1E> /usr/lib/system/libsystem_info.dylib

    0x7fff94e42000 -     0x7fff94e46fff  com.apple.LoginUICore (3.2 - 3.2) <417954C5-1675-31A8-9631-6B56E9AA3E93> /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore

    0x7fff94e47000 -     0x7fff94e52ff7  com.apple.DirectoryService.Framework (10.10 - 187) <F5B30ACE-57D9-31EA-82F9-98F175B277D1> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService

    0x7fff94e53000 -     0x7fff94e60ff3  com.apple.ProtocolBuffer (1 - 228.0.1) <3429EB06-9F0E-355F-B9AB-F72879177398> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer

    0x7fff94ef5000 -     0x7fff94f8aff7  com.apple.ColorSync (4.9.0 - 4.9.0) <9150C2B7-2E6E-3509-96EA-7B3F959F049E> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync

    0x7fff9506d000 -     0x7fff950aefff  libGLU.dylib (11.1.6) <4BC6579D-A6D0-3A19-880E-E29FAEA698E7> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib

    0x7fff950af000 -     0x7fff950c2ff7  com.apple.CoreBluetooth (1.0 - 1) <8D7BA9BA-EB36-307A-9119-0B3D9732C953> /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth

    0x7fff95131000 -     0x7fff95135fff  libspindump.dylib (182.4) <929670EB-4963-3496-AD24-8B50E388803C> /usr/lib/libspindump.dylib

    0x7fff95136000 -     0x7fff9515aff7  com.apple.Sharing (328.17 - 328.17) <AD5E243A-B79F-3D7B-800B-A2C99A1CFEF1> /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing

    0x7fff9515b000 -     0x7fff95166fff  com.apple.AppSandbox (4.0 - 238.20.2) <BEFAB7F2-B189-391B-9B2D-FFF3EE2B77B6> /System/Library/PrivateFrameworks/AppSandbox.framework/Versions/A/AppSandbox

    0x7fff95167000 -     0x7fff951d9fff  com.apple.framework.IOKit (2.0.2 - 1050.20.2) <09C0518C-90DF-3FC3-96D6-34D35F72C8EF> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit

    0x7fff951f7000 -     0x7fff951fdff7  com.apple.XPCService (2.0 - 1) <AA4A5393-1F5D-3465-A417-0414B95DC052> /System/Library/PrivateFrameworks/XPCService.framework/Versions/A/XPCService

    0x7fff95209000 -     0x7fff95241fff  libsystem_network.dylib (412.20.3) <6105C134-6722-3C0A-A4CE-5E1261E2E1CC> /usr/lib/system/libsystem_network.dylib

    0x7fff95255000 -     0x7fff9527effb  libxslt.1.dylib (13) <AED1143F-B848-3E73-81ED-71356F25F084> /usr/lib/libxslt.1.dylib

    0x7fff9527f000 -     0x7fff95291ff7  libsasl2.2.dylib (194.1) <35371406-75EF-304A-A073-956C40373555> /usr/lib/libsasl2.2.dylib

    0x7fff95292000 -     0x7fff9531bff7  com.apple.CoreSymbolication (3.1 - 57020.2) <FDAF88F6-7D11-37BC-B758-4B835FA657BA> /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolication

    0x7fff9531c000 -     0x7fff95369ff3  com.apple.CoreMediaIO (601.0 - 4760) <F3388B24-3498-3E91-8878-7CC87330AEC2> /System/Library/Frameworks/CoreMediaIO.framework/Versions/A/CoreMediaIO

    0x7fff95375000 -     0x7fff954a5fff  com.apple.UIFoundation (1.0 - 1) <466BDFA8-0B9F-3AB0-989D-F9779422926A> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation

    0x7fff954a6000 -     0x7fff954b1fff  libGL.dylib (11.1.6) <38B3FF9A-5660-3080-9DB8-1CAE0E8CD739> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib

    0x7fff954b2000 -     0x7fff95520ff3  com.apple.Heimdal (4.0 - 2.0) <8D1667CF-D454-3E07-A58E-E15591B5A95E> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal

    0x7fff95521000 -     0x7fff95592ffb  com.apple.ApplicationServices.ATS (360 - 375.4) <A1BEBCF8-8FC8-345D-B91D-1DA5773AF5A3> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS

    0x7fff95593000 -     0x7fff955abff7  libexpat.1.dylib (12) <C5FE8836-E277-3162-9D15-6735321CB2C6> /usr/lib/libexpat.1.dylib

    0x7fff955ac000 -     0x7fff955b6ff7  com.apple.NetAuth (5.2 - 5.2) <2BBD749A-8E18-35B8-8E48-A90347C1CCA7> /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth

    0x7fff955b7000 -     0x7fff955c2fff  com.apple.CommerceCore (1.0 - 376.29) <1058502F-8C78-36E1-914A-6403A2231FBA> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore

    0x7fff955c3000 -     0x7fff955c3fff  libOpenScriptingUtil.dylib (162.2) <D6A2216D-ADB2-3F24-AD30-F6D00829F545> /usr/lib/libOpenScriptingUtil.dylib

    0x7fff955c4000 -     0x7fff955c8fff  com.apple.CommonPanels (1.2.6 - 96) <F9ECC8AF-D9CA-3350-AFB4-5113A9B789A5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels

    0x7fff955c9000 -     0x7fff955f4fff  libc++abi.dylib (125) <88A22A0F-87C6-3002-BFBA-AC0F2808B8B9> /usr/lib/libc++abi.dylib

    0x7fff955f5000 -     0x7fff955f7fff  com.apple.EFILogin (2.0 - 2) <3BA837D8-94F5-3240-9CF7-E40DC2808446> /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin

    0x7fff955f8000 -     0x7fff95644ff7  libcups.2.dylib (408.2) <E8AD18F9-61E4-3791-B840-504468C25556> /usr/lib/libcups.2.dylib

    0x7fff95645000 -     0x7fff95646ff7  com.apple.print.framework.Print (10.0 - 265) <3BC4FE7F-78A0-3E57-8F4C-520E7EFD36FA> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print

    0x7fff95647000 -     0x7fff95649fff  libquarantine.dylib (76.20.1) <7AF90041-2768-378A-925A-D83161863642> /usr/lib/system/libquarantine.dylib

    0x7fff9564a000 -     0x7fff95675ff7  com.apple.DictionaryServices (1.2 - 229.1) <62EC3E1B-5A28-3252-90FF-C2E9999C2A2A> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices

    0x7fff95992000 -     0x7fff959ecff7  com.apple.LanguageModeling (1.0 - 1) <ACA93FE0-A0E3-333E-AE3C-8EB7DE5F362F> /System/Library/PrivateFrameworks/LanguageModeling.framework/Versions/A/LanguageModeling

    0x7fff95a23000 -     0x7fff95a77fff  libc++.1.dylib (120) <1B9530FD-989B-3174-BB1C-BDC159501710> /usr/lib/libc++.1.dylib

    0x7fff95a78000 -     0x7fff95a85ff7  com.apple.SpeechRecognitionCore (2.1.2 - 2.1.2) <551322E2-C1E4-3378-A218-F362985E3E3C> /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore

    0x7fff95a86000 -     0x7fff95a8cfff  com.apple.speech.recognition.framework (5.0.9 - 5.0.9) <BB2D573F-0A01-379F-A2BA-3C454EDCB111> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition

    0x7fff95a8d000 -     0x7fff95ad3ff7  libFontRegistry.dylib (134.1) <CE41D8C2-BEED-345C-BC4F-3775CC06C672> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib

    0x7fff95af9000 -     0x7fff95b01fe7  libcldcpuengine.dylib (2.4.5) <6CC680F9-0D13-333B-B151-F0D9C631A1E5> /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/libcldcpuengine.dylib

    0x7fff95b25000 -     0x7fff95b65ff7  libGLImage.dylib (11.1.6) <D6DDC014-2C74-34B3-970A-26F211FF76EF> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib

External Modification Summary:

  Calls made by other processes targeting this process:

    task_for_pid: 21

    thread_create: 0

    thread_set_state: 0

  Calls made by this process:

    task_for_pid: 0

    thread_create: 0

    thread_set_state: 0

  Calls made by all processes on this machine:

    task_for_pid: 2387

    thread_create: 0

    thread_set_state: 0

VM Region Summary:

ReadOnly portion of Libraries: Total=314.3M resident=153.5M(49%) swapped_out_or_unallocated=160.8M(51%)

Writable regions: Total=775.3M written=572.0M(74%) resident=651.3M(84%) swapped_out=4K(0%) unallocated=124.0M(16%)

 

REGION TYPE                      VIRTUAL

===========                      =======

Activity Tracing                   2048K

CG backing stores                  1012K

CG image                            276K

CG shared images                    336K

CoreImage                             8K

CoreUI image data                    84K

Dispatch continuations             8192K

IOKit                              68.5M

Kernel Alloc Once                     8K

MALLOC                            653.7M

MALLOC (admin)                       32K

MALLOC_LARGE (reserved)            4560K        reserved VM address space (unallocated)

Memory Tag 242                       12K

OpenCL                               16K

OpenGL GLSL                         256K

STACK GUARD                        56.0M

Stack                              13.1M

VM_ALLOCATE                        19.4M

VM_ALLOCATE (reserved)               36K        reserved VM address space (unallocated)

__DATA                             30.3M

__GLSLBUILTINS                     2588K

__IMAGE                             528K

__LINKEDIT                         77.9M

__TEXT                            236.4M

__UNICODE                           552K

mapped file                        73.0M

shared memory                        68K

===========                      =======

TOTAL                               1.2G

TOTAL, minus reserved VM space      1.2G

 

Model: iMac12,1, BootROM IM121.0047.B23, 4 processors, Intel Core i5, 2.5 GHz, 4 GB, SMC 1.71f21

Graphics: AMD Radeon HD 6750M, AMD Radeon HD 6750M, PCIe, 512 MB

Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE, 0x4D34373142353637334648302D4348392020

Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE, 0x4D34373142353637334648302D4348392020

AirPort: spairport_wireless_card_type_airport_extreme (0x168C, 0x9A), Atheros 9380: 4.0.74.0-P2P

Bluetooth: Version 4.3.6f3 16238, 3 services, 19 devices, 1 incoming serial ports

Network Service: Ethernet, Ethernet, en0

Serial ATA Device: WDC WD5000AAKS-402AA0, 500.11 GB

Serial ATA Device: HL-DT-STDVDRW  GA32N

USB Device: FaceTime HD Camera (Built-in)

USB Device: Hub

USB Device: BRCM2046 Hub

USB Device: Bluetooth USB Host Controller

USB Device: Hub

USB Device: Cruzer Edge

USB Device: Keyboard Hub

USB Device: Apple Optical USB Mouse

USB Device: Apple Keyboard

USB Device: IR Receiver

USB Device: Internal Memory Card Reader

Thunderbolt Bus: iMac, Apple Inc., d.0

[Michael MacAskill]

Hi Anneke,

This is a bit beyond me. I can help (sometimes at least) with Python-level errors. But this crash is coming from the operating system level and it is hard to see what typical Python programming-type things could do that.

It does point to something specific about the configuration on that computer (is it sill only occurring there?) For example, maybe the PsychoPy installation has been corrupted in some way. Have you tried deleting it and reinstalling a freshly-downloaded copy?

Regards,

Michael

> On 4/02/2016, at 02:35, Anneke Haddad <anneke...@gmail.com> wrote:
>
> So, I rewrote the task in Builder, which I hoped would solve any issues that were related to my code. The new Builder task seemed to be running fine, but my student has just reported that she has once again failed to get a csv file for her most recent participant.
>
> She says that when the participant got to the end of the task, she got the spinning beachball and then a pop-up window saying 'Psychopy quit unexpectedly'. I have attached a screenshot of this error message and the full text of the message is below.
>
> Interestingly, this time she says she didn't get the message 'Fatal Python error: (pygame parachute) Segmentation Fault" which I had thought was consistently related to the non-saving of the csv file - perhaps I was wrong about that!
>
> Michael, you asked if I started some process or created some object that remain in existence, and won't be cleared by the standard PsychoPy quit procedure - I don't know what sort of process/object this would be - perhaps it is relevant that the task uses sound files and a movie file? But surely those would be cleared by the standard quit procedure that is called by Builder at the end of the experiment?