Psychopy crashes randomly during experiment

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Colby Tibbets

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Jul 2, 2015, 7:39:17 AM7/2/15

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Hello,

For the past two days I have had psychopy crash during my pilot, previously there wasn't a problem, and nothing in the script was changed.

Any ideas why?

Process: python [5110]

Path: /Applications/PsychoPy2.app/Contents/MacOS/python

Identifier: org.psychopy.PsychoPy2

Version: 1.81.00 (0.0.0)

Code Type: X86 (Native)

Parent Process: PsychoPy2 [5072]

Responsible: PsychoPy2 [5072]

User ID: 501

Date/Time: 2015-07-02 12:41:37.101 +0200

OS Version: Mac OS X 10.10.3 (14D136)

Report Version: 11

Anonymous UUID: E4149BB9-B5FC-CADA-87FD-106BAC8A4956

Sleep/Wake UUID: B84C7F60-63D6-4A44-9969-A3E159A176F6

Time Awake Since Boot: 130000 seconds

Time Since Wake: 2300 seconds

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGABRT)

Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000

VM Regions Near 0:

-->

__TEXT 0000000000001000-0000000000002000 [ 4K] r-x/rwx SM=COW /Applications/PsychoPy2.app/Contents/MacOS/python

Application Specific Information:

abort() called

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread

0 libsystem_kernel.dylib 0x997dc69a __pthread_kill + 10

1 libsystem_pthread.dylib 0x98886f19 pthread_kill + 101

2 libsystem_c.dylib 0x95f90eee abort + 156

3 org.python.python 0x000f1c59 Py_FatalError + 73

4 libsystem_platform.dylib 0x98e6903b _sigtramp + 43

5 ??? 0xffffffff 0 + 4294967295

6 base.so 0x03b2c6c1 initbase + 1424

7 GLEngine 0x966fbc7c glBufferSubData_Exec + 732

8 libGL.dylib 0x90cd5ae8 glBufferSubData + 55

9 _ctypes.so 0x0294dded ffi_call_SYSV + 29

10 _ctypes.so 0x0294e1a1 ffi_call + 97

11 _ctypes.so 0x029483cf _ctypes_callproc + 687

12 _ctypes.so 0x02941b02 _ctypes_simple_instance + 2962

13 org.python.python 0x0000f9c5 PyObject_Call + 85

14 org.python.python 0x000c99f6 PyEval_EvalFrameEx + 14294

15 org.python.python 0x000cc433 PyEval_EvalFrameEx + 25107

16 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

17 org.python.python 0x000cb633 PyEval_EvalFrameEx + 21523

18 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

19 org.python.python 0x000cb633 PyEval_EvalFrameEx + 21523

20 org.python.python 0x000cc433 PyEval_EvalFrameEx + 25107

21 org.python.python 0x000cc433 PyEval_EvalFrameEx + 25107

22 org.python.python 0x000cc433 PyEval_EvalFrameEx + 25107

23 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

24 org.python.python 0x000cb633 PyEval_EvalFrameEx + 21523

25 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

26 org.python.python 0x000cb633 PyEval_EvalFrameEx + 21523

27 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

28 org.python.python 0x000cb633 PyEval_EvalFrameEx + 21523

29 org.python.python 0x000cd40a PyEval_EvalCodeEx + 2042

30 org.python.python 0x000cd597 PyEval_EvalCode + 87

31 org.python.python 0x000f1ac8 PyRun_FileExFlags + 168

32 org.python.python 0x000f2a03 PyRun_SimpleFileExFlags + 867

33 org.python.python 0x0010ba71 Py_Main + 3249

34 python 0x00001f82 0x1000 + 3970

35 python 0x00001ea9 0x1000 + 3753

Thread 1:: Dispatch queue: com.apple.libdispatch-manager

0 libsystem_kernel.dylib 0x997dd8ce kevent64 + 10

1 libdispatch.dylib 0x95d2f73f _dispatch_mgr_invoke + 245

2 libdispatch.dylib 0x95d2f3a2 _dispatch_mgr_thread + 52

Thread 0 crashed with X86 Thread State (32-bit):

eax: 0x00000000 ebx: 0x000f1c19 ecx: 0xbfffd93c edx: 0x00000000

edi: 0xa0db31d4 esi: 0x00000006 ebp: 0xbfffd958 esp: 0xbfffd93c

ss: 0x00000023 efl: 0x00000206 eip: 0x997dc69a cs: 0x0000000b

ds: 0x00000023 es: 0x00000023 fs: 0x00000000 gs: 0x0000000f

cr2: 0xa0bbca00

Logical CPU: 0

Error Code: 0x00080148

Trap Number: 132

Binary Images:

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0x9bd64000 - 0x9bd83ff7 com.apple.GenerationalStorage (2.0 - 209.11) <34CF76B2-8052-359D-816D-092608FB6919> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage

0x9bd88000 - 0x9c086ffb com.apple.CoreServices.CarbonCore (1108.6 - 1108.6) <ABEA5906-26AE-308F-B078-5944ABDF94DF> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore

0x9c087000 - 0x9c3e8ff3 com.apple.Foundation (6.9 - 1153.20) <B2539D54-EC35-3388-82C7-B01BB225A804> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation

0x9c3e9000 - 0x9c406fff libCRFSuite.dylib (34) <781A92EF-410E-39B2-953D-FEE12748D834> /usr/lib/libCRFSuite.dylib

0x9c407000 - 0x9c45cff7 com.apple.htmlrendering (77 - 1.1.4) <B85A63B9-C9DD-3ECC-B5DC-E12533C7FDF9> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering

0x9c45f000 - 0x9c461ff7 libquarantine.dylib (76.20.1) <8694AC5A-7359-3CC6-8E93-CABFCC919D4B> /usr/lib/system/libquarantine.dylib

0x9c462000 - 0x9c46fff7 com.apple.speech.synthesis.framework (5.3.3 - 5.3.3) <3771942E-13BB-30C0-9992-11EE637871DC> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis

External Modification Summary:

Calls made by other processes targeting this process:

task_for_pid: 21

thread_create: 0

thread_set_state: 0

Calls made by this process:

task_for_pid: 0

thread_create: 0

thread_set_state: 0

Calls made by all processes on this machine:

task_for_pid: 59290

thread_create: 0

thread_set_state: 0

VM Region Summary:

ReadOnly portion of Libraries: Total=267.3M resident=82.5M(31%) swapped_out_or_unallocated=184.8M(69%)

Writable regions: Total=3.3G written=2.1G(64%) resident=2.1G(65%) swapped_out=768.2M(23%) unallocated=1.1G(35%)

REGION TYPE VIRTUAL

=========== =======

ATS (font support) 33.2M

CG backing stores 2820K

CG image 8K

CG shared images 272K

CoreUI image data 56K

IOKit 93.2M

Kernel Alloc Once 4K

MALLOC 1.7G

MALLOC (admin) 48K

Memory Tag 242 12K

Memory Tag 249 156K

OpenCL 16K

OpenGL GLSL 128K

Stack 64.1M

VM_ALLOCATE 1.5G

__DATA 14.0M

__GLSLBUILTINS 2588K

__IMAGE 528K

__IMPORT 400K

__LINKEDIT 49.8M

__OBJC 2840K

__TEXT 217.5M

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mapped file 100.2M

shared memory 68K

=========== =======

TOTAL 3.7G

Model: MacBookAir6,2, BootROM MBA61.0099.B18, 2 processors, Intel Core i7, 1.7 GHz, 8 GB, SMC 2.13f15

Graphics: Intel HD Graphics 5000, Intel HD Graphics 5000, Built-In

Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x02FE, -

Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x02FE, -

AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x117), Broadcom BCM43xx 1.0 (7.15.166.24.3)

Bluetooth: Version 4.3.4f4 15601, 3 services, 27 devices, 1 incoming serial ports

Serial ATA Device: APPLE SSD SM0256F, 251 GB

USB Device: Internal Memory Card Reader

USB Device: USB Receiver

USB Device: BRCM20702 Hub

USB Device: Bluetooth USB Host Controller

Thunderbolt Bus: MacBook Air, Apple Inc., 23.6

Jonathan Peirce

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Jul 2, 2015, 9:29:27 AM7/2/15

to psychop...@googlegroups.com

From what you've told us? No idea.
Do demos run? What works and what doesn't? Is there anything special
you're doing in your experiment? Is it Builder or Coder? If builder have
you added custom code? How long does it run before crashing?

Basically... give us a clue!

On 02/07/15 12:39, Colby Tibbets wrote:
>
> Any ideas why?

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Jonathan Peirce
University of Nottingham

http://www.peirce.org.uk

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Colby Tibbets

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Jul 3, 2015, 7:33:24 AM7/3/15

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I built this script in the coder window. The trials run, but crash unexpectedly. I do not feel it is an issue with any psychopy code, and the tech supervisor at my university mentioned that it appears to run out of memory during a process because the error shows that it tried to read or write at address 0. The code runs a participant's selections through an algorithm to determine a feedback score, this does take some time to compute and crashes randomly during this calculation. I do not why this happens randomly (and sometimes not at all), or why it happens only online (during the experiment). I thought maybe someone with more experience might be able to decipher the error message.

Colby Tibbets

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Jul 3, 2015, 8:01:39 AM7/3/15

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This is the exception raised in the error message:

The Exception Type, SIGSEGV, is a segment violation -- the program tried to access some memory other than what was allocated to it by the operating system. Possibly it used an uninitialized pointer, or a return-address or some other pointer got over-written which could happen if a buffer on the program stack was over-run.

Jeremy Gray

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Jul 3, 2015, 8:43:35 AM7/3/15

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Tell us more about your algorithm that computes the feedback score. Its surprising that it takes a while to run.

The error you are getting is not really from python proper, because python handles memory allocation for you. But things that are written in C and so on, and get called from python, can do bad things with memory, causing trouble and seg faults, making python fail.

--Jeremy

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Colby Tibbets

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Jul 3, 2015, 11:31:09 AM7/3/15

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I ran some tests, and it appears that it is the CPU that is being maxed out. I ran it on a laptop with 4 cores rather than 2, and it did run a bit faster, and did not crash. I think the problem is that I ran the experiment on battery power, so my CPU wasn't running optimally. The algorithm is slow due to a parameter manipulated during the trials. However, since this parameter is of experimental interest to this study, it cannot be optimized/changed.

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