search by interactor database

[Arnaud Céol]

Dear psicquic developers and users,

I want to select from the registry all services which interactions are described with Uniprotkb identifiers. My first idea was to query for idA and idB which contains the string "uniprotkb", but it will fail because the database is not indexed in lucene.

Do anyone have a suggestion on how I can manage this query?

thanks,

Arnaud

[Rafael Jimenez]

Hi Arnaud,

On 9 December 2013 14:44, Arnaud Céol <arnaud.ceol@gmail.com> wrote:

Dear psicquic developers and users,

I want to select from the registry all services which interactions are described with Uniprotkb identifiers.

The registry will not give you this information, so you will have to query service by service. You could though select those services which provide "protein-protein" interactions.

 

My first idea was to query for idA and idB which contains the string "uniprotkb", but it will fail because the database is not indexed in lucene.

As far as I know this is possible. ie in intact 270264 from 300102 interactions are "uniprotkb - uniprotkb"

Regards,

Rafael

 

Do anyone have a suggestion on how I can manage this query?

thanks,

Arnaud

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[Arnaud Céol]

On Monday, 9 December 2013 16:40:42 UTC+1, Rafael C. Jimenez wrote:

Hi Arnaud,

On 9 December 2013 14:44, Arnaud Céol <arnaud.ceol@gmail.com> wrote:

Dear psicquic developers and users,

I want to select from the registry all services which interactions are described with Uniprotkb identifiers.

The registry will not give you this information, so you will have to query service by service. You could though select those services which provide "protein-protein" interactions.

 

My first idea was to query for idA and idB which contains the string "uniprotkb", but it will fail because the database is not indexed in lucene.

As far as I know this is possible. ie in intact 270264 from 300102 interactions are "uniprotkb - uniprotkb"

You're right, the query is "idA:uniprotkb AND idB:uniprotkb". For some reason I failed to do it before.

Thank you very much!