Using MIQL to query complexes represented by bipartite model

[Ruth Isserlin]

Hi,
I am wondering if there is a way to use MIQL to query to see if two protein are in the same complex (where the complexes are represented by the bi-partite model).
I want to see if protein X and protein Y are in the same complex but the complex is represented as X-complex and Y-complex.

When complexes are represented by spoke or matrix models I can just query:
(ida:A and idb:B) or (ida:B and idb:A)
Is there a way to do this when they are in a bipartite model?
Specifically I want to know if X and Y are in the same CORUM complex. I know corum is in the irefindex which represents it in the bi-partite model, is there another source that also contains CORUM but represented in matrix model?

Thanks,
Ruth

[Lukasz Salwinski]

Ruth,
as currently implemented, PSICQUIC server(s) are not able to find
combinations of records that match a given query. This is because
SOLR (or, in general, index search engines) trade the ability to
perform search-time joins for speed and the query you're looking for
would involve creating a self-join on the PSICQUIC records.

lukasz


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Lukasz Salwinski PHONE: 310-825-1402
UCLA-DOE Institute for Genomics & Proteomics FAX: 310-206-3914
UCLA, Los Angeles EMAIL: luk...@mbi.ucla.edu
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