Announcing PSGInfer v1.2.1

[cnd...@gmail.com]

The PSGInfer team is proud to announce the release of v1.2.1 of the software.  The release includes a number of important bug fixes.

Grab the new version here: 
http://deweylab.biostat.wisc.edu/psginfer/

Changes

• Improved efficiency of parameter estimation code
• Improved efficiency of alignment processing for single-end data
• Added -XX:+UseSerialGC option to calls to JVM to allow for better parallelization on many-core machines

Bug fixes

• Fixed issue caused by read titles containing whitespace. This issue led to read counts of zero for the majority of genes when reads had titles with whitespace separated words.
  
• Fixed incorrect determination of read length. This issue led to incorrect computation of likelihoods but only had a minor effect on parameter estimates.
• Fixed alignment processing for single-end data. This issue led to incorrect computation of likelihoods but only had a minor effect on parameter estimates.