Jinjing,
Please specify how you intend to solve this problem with Chrono. In other words, which Chrono module you plan on using.
In general, you can disable interaction through contact between any two bodies by placing their collision models in specific collision families (see ChCollisionModel::SetFamily) and then disabling collisions with a particular family (see ChCollisionModel:: DisallowCollisionsWith). In your case, for each of your boxes, you can set the facility to 1 (for example) and then disallow collisions with family 1.
--Radu
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