Fwd: PLOS Computational Biology Volume 16(2) February 2020

[Dr. Achuthsankar S. Nair]

Prof Achuthsankar S Nair 
Dept of Computational Biology and Bioinformatics  
University of Kerala, Karyavattom, Thiruvananthapuram 695581 INDIA
Telephone:     O:  9446928759    R: 8304802717 (Both R and O are Fixed Phones)
Web    sites.google.com/site/achushome  FB:  facebook.com/achuthsankar.snair


 

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From: PLOS Computational Biology <ale...@e.plos.org>
Date: Tue, Mar 3, 2020 at 3:58 AM
Subject: PLOS Computational Biology Volume 16(2) February 2020
To: <sankar...@gmail.com>

ADVERTISEMENT Manage Preferences > New Articles in PLOS Computational Biology PUBLISHED: February 01, 2020 to February 28, 2020 Editorials Ten simple rules for getting started on Twitter as a scientist Veronika Cheplygina, Felienne Hermans, Casper Albers, Natalia Bielczyk, Ionica Smeets Ten Simple Rules to becoming a principal investigator John S. Tregoning, Jason E. McDermott Research Articles Changes-of-mind in the absence of new post-decision evidence Nadim A. A. Atiya, Arkady Zgonnikov, Denis O’Hora, Martin Schoemann, Stefan Scherbaum, KongFatt Wong-Lin Surprise response as a probe for compressed memory states Hadar Levi-Aharoni, Oren Shriki, Naftali Tishby Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties Flavia Corsi, Richard Lavery, Elodie Laine, Alessandra Carbone SynToxProfiler: An interactive analysis of drug combination synergy, toxicity and efficacy Aleksandr Ianevski, Sanna Timonen, Alexander Kononov, Tero Aittokallio, Anil K. Giri Navigable maps of structural brain networks across species Antoine Allard, M. Ángeles Serrano Optimality of sparse olfactory representations is not affected by network plasticity Collins Assisi, Mark Stopfer, Maxim Bazhenov DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning Janine Arloth, Gökcen Eraslan, Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Melanie Waldenberger, Josef Frank, Ralf Gold, Bernhard Hemmer, Felix Luessi, Sandra Nischwitz, Friedemann Paul, Heinz Wiendl, Christian Gieger, Stefanie Heilmann-Heimbach, Tim Kacprowski, Matthias Laudes, Thomas Meitinger, Annette Peters, Rajesh Rawal, Konstantin Strauch, Susanne Lucae, Bertram Müller-Myhsok, Marcella Rietschel, Fabian J. Theis, Elisabeth B. Binder, Nikola S. Mueller Interference with HIV infection of the first cell is essential for viral clearance at sub-optimal levels of drug inhibition Ana Moyano, Gila Lustig, Hylton E. Rodel, Tibor Antal, Alex Sigal Predicting colorectal cancer risk from adenoma detection via a two-type branching process model Brian M. Lang, Jack Kuipers, Benjamin Misselwitz, Niko Beerenwinkel Orbit Image Analysis: An open-source whole slide image analysis tool Manuel Stritt, Anna K. Stalder, Enrico Vezzali Opponent processes in visual memories: A model of attraction and repulsion in navigating insects’ mushroom bodies Florent Le Möel, Antoine Wystrach What makes or breaks a campaign to stop an invading plant pathogen? Alice E. Milne, Tim Gottwald, Stephen R. Parnell, Vasthi Alonso Chavez, Frank van den Bosch The hourglass organization of the Caenorhabditis elegans connectome Kaeser M. Sabrin, Yongbin Wei, Martijn Pieter van den Heuvel, Constantine Dovrolis Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic Susanne Reimering, Sebastian Muñoz, Alice C. McHardy Multi-state design of flexible proteins predicts sequences optimal for conformational change Marion F. Sauer, Alexander M. Sevy, James E. Crowe Jr., Jens Meiler SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases Paul Hager, Hans-Werner Mewes, Meino Rohlfs, Christoph Klein, Tim Jeske A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells Shubham Tripathi, Priyanka Chakraborty, Herbert Levine, Mohit Kumar Jolly The role of spatial structure in the evolution of viral innate immunity evasion: A diffusion-reaction cellular automaton model Ernesto Segredo-Otero, Rafael Sanjuán Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq Xiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan H. Yang Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation Simon Dirmeier, Christopher Dächert, Martijn van Hemert, Ali Tas, Natacha S. Ogando, Frank van Kuppeveld, Ralf Bartenschlager, Lars Kaderali, Marco Binder, Niko Beerenwinkel A model for time interval learning in the Purkinje cell Daniel Majoral, Ajmal Zemmar, Raul Vicente Leveraging effect size distributions to improve polygenic risk scores derived from summary statistics of genome-wide association studies Shuang Song, Wei Jiang, Lin Hou, Hongyu Zhao A stochastic model for simulating ribosome kinetics in vivo Eric Charles Dykeman CovCopCan: An efficient tool to detect Copy Number Variation from amplicon sequencing data in inherited diseases and cancer Paco Derouault, Jasmine Chauzeix, David Rizzo, Federica Miressi, Corinne Magdelaine, Sylvie Bourthoumieu, Karine Durand, Hélène Dzugan, Jean Feuillard, Franck Sturtz, Stéphane Mérillou, Anne-Sophie Lia Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies Lu Li, Massimo Lai, Stephen Cole, Nicolas Le Novère, Stuart J. Edelstein A generative growth model for thalamocortical axonal branching in primary visual cortex Pegah Kassraian-Fard, Michael Pfeiffer, Roman Bauer SuperFreq: Integrated mutation detection and clonal tracking in cancer Christoffer Flensburg, Tobias Sargeant, Alicia Oshlack, Ian J. Majewski Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis Qian-Yuan Tang, Kunihiko Kaneko Coding with transient trajectories in recurrent neural networks Giulio Bondanelli, Srdjan Ostojic From whole-organ imaging to in-silico blood flow modeling: A new multi-scale network analysis for revisiting tissue functional anatomy Pol Kennel, Jules Dichamp, Corinne Barreau, Christophe Guissard, Lise Teyssedre, Jacques Rouquette, Julien Colombelli, Anne Lorsignol, Louis Casteilla, Franck Plouraboué Bayesian inference and comparison of stochastic transcription elongation models Jordan Douglas, Richard Kingston, Alexei J. Drummond RAINBOW: Haplotype-based genome-wide association study using a novel SNP-set method Kosuke Hamazaki, Hiroyoshi Iwata Enhancing reproducibility of gene expression analysis with known protein functional relationships: The concept of well-associated protein Joël R. Pradines, Victor Farutin, Nicholas A. Cilfone, Abouzar Ghavami, Elma Kurtagic, Jamey Guess, Anthony M. Manning, Ishan Capila Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network Andrei Zinovyev, Urszula Czerwinska, Laura Cantini, Emmanuel Barillot, Klaus M. Frahm, Dima L. Shepelyansky Nonlinear mixed selectivity supports reliable neural computation W. Jeffrey Johnston, Stephanie E. Palmer, David J. Freedman Deep Learning-driven research for drug discovery: Tackling Malaria Bruno J. Neves, Rodolpho C. Braga, Vinicius M. Alves, Marília N. N. Lima, Gustavo C. Cassiano, Eugene N. Muratov, Fabio T. M. Costa, Carolina Horta Andrade Dynamic integration of forward planning and heuristic preferences during multiple goal pursuit Florian Ott, Dimitrije Marković, Alexander Strobel, Stefan J. Kiebel Early prediction of antigenic transitions for influenza A/H3N2 Lauren A. Castro, Trevor Bedford, Lauren Ancel Meyers The role of adaptation in generating monotonic rate codes in auditory cortex Jong Hoon Lee, Xiaoqin Wang, Daniel Bendor Inferring TF activation order in time series scRNA-Seq studies Chieh Lin, Jun Ding, Ziv Bar-Joseph Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane Realistic assumptions about spatial locations and clustering of premises matter for models of foot-and-mouth disease spread in the United States Stefan Sellman, Michael J. Tildesley, Christopher L. Burdett, Ryan S. Miller, Clayton Hallman, Colleen T. Webb, Uno Wennergren, Katie Portacci, Tom Lindström Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials Daniel B. Reeves, Yunda Huang, Elizabeth R. Duke, Bryan T. Mayer, E. Fabian Cardozo-Ojeda, Florencia A. Boshier, David A. Swan, Morgane Rolland, Merlin L. Robb, John R. Mascola, Myron S. Cohen, Lawrence Corey, Peter B. Gilbert, Joshua T. Schiffer Cytoskeleton polarity is essential in determining orientational order in basal bodies of multi-ciliated cells Toshinori Namba, Shuji Ishihara Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy Natacha Comandante-Lou, Mehwish Khaliq, Divya Venkat, Mohan Manikkam, Mohammad Fallahi-Sichani DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution Hao Hong, Shuai Jiang, Hao Li, Guifang Du, Yu Sun, Huan Tao, Cheng Quan, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Cheng Li, Hebing Chen, Xiaochen Bo Graph-based description of tertiary lymphoid organs at single-cell level Nadine S. Schaadt, Ralf Schönmeyer, Germain Forestier, Nicolas Brieu, Peter Braubach, Katharina Nekolla, Michael Meyer-Hermann, Friedrich Feuerhake A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks M. Ali Al-Radhawi, David Angeli, Eduardo D. Sontag The SONATA data format for efficient description of large-scale network models Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura-Bernal, Padraig Gleeson, Adrien Devresse, Benjamin K. Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Muller, Jean-Denis Courcol, Anton Arkhipov Reprogramming of macrophages employing gene regulatory and metabolic network models Franziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König A biophysical model of striatal microcircuits suggests delta/theta-rhythmically interleaved gamma and beta oscillations mediate periodicity in motor control Julia A. K. Chartove, Michelle M. McCarthy, Benjamin R. Pittman-Polletta, Nancy J. Kopell Tximeta: Reference sequence checksums for provenance identification in RNA-seq Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori Shepherd, Martin Morgan, Rob Patro The relation between crosstalk and gene regulation form revisited Rok Grah, Tamar Friedlander In silico investigation of the mechanisms underlying atrial fibrillation due to impaired Pitx2 Jieyun Bai, Andy Lo, Patrick A. Gladding, Martin K. Stiles, Vadim V. Fedorov, Jichao Zhao Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors Cristina Vaghi, Anne Rodallec, Raphaëlle Fanciullino, Joseph Ciccolini, Jonathan P. Mochel, Michalis Mastri, Clair Poignard, John M. L. Ebos, Sébastien Benzekry Non-ohmic tissue conduction in cardiac electrophysiology: Upscaling the non-linear voltage-dependent conductance of gap junctions Daniel E. Hurtado, Javiera Jilberto, Grigory Panasenko Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6,700 cancer genomes Chuang Liu, Junfei Zhao, Weiqiang Lu, Yao Dai, Jennifer Hockings, Yadi Zhou, Ruth Nussinov, Charis Eng, Feixiong Cheng From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response Jill A. Gallaher, Susan C. Massey, Andrea Hawkins-Daarud, Sonal S. Noticewala, Russell C. Rockne, Sandra K. Johnston, Luis Gonzalez-Cuyar, Joseph Juliano, Orlando Gil, Kristin R. Swanson, Peter Canoll, Alexander R. A. Anderson Doubting what you already know: Uncertainty regarding state transitions is associated with obsessive compulsive symptoms Isaac Fradkin, Casimir Ludwig, Eran Eldar, Jonathan D. Huppert Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction Bastien Berret, Frédéric Jean Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein Lenka Stejskal, William D. Lees, David S. Moss, Machaela Palor, Richard J. Bingham, Adrian J. Shepherd, Joe Grove Human decision making anticipates future performance in motor learning Joshua B. Moskowitz, Daniel J. Gale, Jason P. Gallivan, Daniel M. Wolpert, J. Randall Flanagan ADVERTISEMENT Want to hear more from PLOS? 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