Visualize Prodigal output

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SAMIK BAGCHI

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Mar 15, 2016, 3:16:56 PM3/15/16
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Dear Team, 

I'm new to Prodigal. I have generated the gene coordinates (gbk) and protein (.faa) files using prodigal/2.6.3. what is the best way to visualize the predicated protein? 


Thank you
Samik

dhyatt1

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Apr 15, 2016, 7:53:46 PM4/15/16
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This is more a question for Google (i.e. googling "visualize gff files" gives good results).

It is likely easier to visualize GFF than the default pseudo-gbk format (i.e. use the '-f gff' option).

good luck!
doug
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