Your observation is right.
OwnCloud really sucks at the client side authentication, since it caches
passwords and does not use authentication tokens like OAuth or anything
else. You have the same problem with the desktop client, which will
result in locked tokens.
Fixing things in the backend (privacyidea) that are broken in the
frontend (owncloud) is the wrong approach.
However, you can assign a second token to the user, a simple pass token,
which only consists of the OTP PIN - i.e. a fixed password. Since this
is what this software which I also finally banned from my computers is
capable of handling.
This way you can use a SPASS token for the iOS app an true OTP for the
web app.
Kind regards
Cornelius
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Cornelius Kölbel
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+49 151 2960 1417
NetKnights GmbH
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Geschäftsführer: Cornelius Kölbel