Error when installing Runestone Docker on Ubuntu server
sfl...@bridgew.edu
I have followed the instructions up to https://runestoneserver.readthedocs.io/en/latest/docker/README.html#starting-the-containerized-application , but nothing loads when I visit the IP address of the server (which I configured in .env). Furthermore, systemctl does not show any web server running.
The following command line output seems like it might be relevant. Did I miss a step, or is some other software configuration required?
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ /usr/local/bin/python3 runestone_poetry_project/poetry_fix.py --no-dev
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ poetry config virtualenvs.in-project true
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ poetry install --no-dev
runestoneserver-runestone-1 | The `--no-dev` option is deprecated, use the `--only main` notation instead.
runestoneserver-runestone-1 | Updating dependencies
runestoneserver-runestone-1 | Resolving dependencies...
runestoneserver-runestone-1 |
runestoneserver-runestone-1 | Traceback (most recent call last):
runestoneserver-runestone-1 | File "/srv/web2py/applications/runestone/docker/docker_tools.py", line 486, in build
runestoneserver-runestone-1 | _build_phase_2_core(build_config, arm, pic24, rust, tex)
runestoneserver-runestone-1 | File "/srv/web2py/applications/runestone/docker/docker_tools.py", line 904, in _build_phase_2_core
runestoneserver-runestone-1 | run_poetry(build_config.is_dev())
runestoneserver-runestone-1 | File "/srv/web2py/applications/runestone/docker/docker_tools.py", line 1083, in run_poetry
runestoneserver-runestone-1 | xqt(
runestoneserver-runestone-1 | File "/srv/web2py/applications/runestone/docker/../tests/ci_utils.py", line 67, in xqt
runestoneserver-runestone-1 | cp = subprocess.run(
runestoneserver-runestone-1 | File "/usr/local/lib/python3.9/subprocess.py", line 528, in run
runestoneserver-runestone-1 | raise CalledProcessError(retcode, process.args,
runestoneserver-runestone-1 | subprocess.CalledProcessError: Command 'poetry install --no-dev' died with <Signals.SIGKILL: 9>.
runestoneserver-runestone-1 | Failed to start the Runestone servers.
runestoneserver-runestone-1 | =-=-= Runestone setup finished =-=-=
Brad Miller
If you want to send me the entire log I might be able to see more of what is going on and give you a better idea of what might be happening in your case.
Is this a nice clean ubuntu 20 / 22? I have not tried an install from scratch on Ubuntu 22, but I regularly wipe and rebuild my ubuntu 20 image and have not had this issue.
What command and options did you use to build the container?
Brad
Bradley Miller, PhD
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sfl...@bridgew.edu
sflood:~/rsdocker/RunestoneServer$ docker-tools build
/home/sflood/rsdocker/RunestoneServer$ cp docker/.env.prototype .env
/home/sflood/rsdocker/RunestoneServer$ ENABLE_BUILDKIT=1 docker build -t runestone/server . --build-arg DOCKER_BUILD_ARGS="build" --progress plain
Sending build context to Docker daemon 68.9MB
Step 1/13 : FROM python:3.9-bullseye
3.9-bullseye: Pulling from library/python
f606d8928ed3: Pull complete
47db815c6a45: Pull complete
bf4849400000: Pull complete
a572f7a256d3: Pull complete
8f7d05258955: Pull complete
7110f04115ae: Pull complete
fbbc348caac4: Pull complete
0fc5e2c629c7: Pull complete
12576cf3d20f: Pull complete
Digest: sha256:d084f55e2bfeb86ae8e1f3fbac55aad813c7c343c7cbacc91ee11a2d07c32d25
Status: Downloaded newer image for python:3.9-bullseye
---> e4bf78b64f77
Step 2/13 : LABEL authors="@bnmnetp,@vsoch,@yarikoptic,@bjones1"
---> Running in 57d2add4f91d
Removing intermediate container 57d2add4f91d
---> aac14da073f1
Step 3/13 : ARG DOCKER_BUILD_ARGS
---> Running in 4b7365e52b57
Removing intermediate container 4b7365e52b57
---> 9111db8c402d
Step 4/13 : ENV DOCKER_BUILD_ARGS=${DOCKER_BUILD_ARGS}
---> Running in 46f30fca2cee
Removing intermediate container 46f30fca2cee
---> e063e587904f
Step 5/13 : ENV WEB2PY_PATH=/srv/web2py
---> Running in 149dd16594b2
Removing intermediate container 149dd16594b2
---> 80170d639d8d
Step 6/13 : ENV RUNESTONE_PATH=${WEB2PY_PATH}/applications/runestone
---> Running in 3d98a9f8d090
Removing intermediate container 3d98a9f8d090
---> 82c0fbc8f900
Step 7/13 : ENV BOOK_SERVER_PATH=/srv/BookServer
---> Running in f78aed283448
Removing intermediate container f78aed283448
---> 429b5416142a
Step 8/13 : ENV LC_ALL=C.UTF-8
---> Running in ee20fd2e2a75
Removing intermediate container ee20fd2e2a75
---> 798273f34547
Step 9/13 : ENV LANG=C.UTF-8
---> Running in d89655229cf3
Removing intermediate container d89655229cf3
---> 58bf14c6f116
Step 10/13 : ARG DEBIAN_FRONTEND=noninteractive
---> Running in cde8f1ebc230
Removing intermediate container cde8f1ebc230
---> d88bfc92d904
Step 11/13 : COPY . ${RUNESTONE_PATH}
---> 022b609ed289
Step 12/13 : RUN IN_DOCKER=1 python3 ${RUNESTONE_PATH}/docker/docker_tools.py ${DOCKER_BUILD_ARGS}
---> Running in 316c153f035a
pip 22.0.4 from /usr/local/lib/python3.9/site-packages/pip (python 3.9)
Checking for '/usr/local/bin/python3 -m pip --version'...
Found.
Installing Python dependencies...
/$ /usr/local/bin/python3 -m pip install --user --upgrade pip
Requirement already satisfied: pip in /usr/local/lib/python3.9/site-packages (22.0.4)
Collecting pip
Downloading pip-22.2.2-py3-none-any.whl (2.0 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 14.8 MB/s eta 0:00:00
Installing collected packages: pip
WARNING: The scripts pip, pip3 and pip3.9 are installed in '/root/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed pip-22.2.2
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
WARNING: You are using pip version 22.0.4; however, version 22.2.2 is available.
You should consider upgrading via the '/usr/local/bin/python3 -m pip install --upgrade pip' command.
/$ /usr/local/bin/python3 -m pip install --user --upgrade click
Collecting click
Downloading click-8.1.3-py3-none-any.whl (96 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 96.6/96.6 kB 4.1 MB/s eta 0:00:00
Installing collected packages: click
Successfully installed click-8.1.3
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
/$ apt update
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB]
Get:2 http://deb.debian.org/debian-security bullseye-security InRelease [48.4 kB]
Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB]
Get:4 http://deb.debian.org/debian bullseye/main amd64 Packages [8184 kB]
Get:5 http://deb.debian.org/debian-security bullseye-security/main amd64 Packages [189 kB]
Get:6 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [6344 B]
Fetched 8587 kB in 2s (3668 kB/s)
Reading package lists...
Building dependency tree...
Reading state information...
All packages are up to date.
/$ apt install -y --no-install-recommends eatmydata lsb-release
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
distro-info-data libeatmydata1
The following NEW packages will be installed:
distro-info-data eatmydata libeatmydata1 lsb-release
0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
Need to get 67.2 kB of archives.
After this operation, 159 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian bullseye/main amd64 distro-info-data all 0.51+deb11u2 [7684 B]
Get:2 http://deb.debian.org/debian bullseye/main amd64 libeatmydata1 amd64 105-9 [15.5 kB]
Get:3 http://deb.debian.org/debian bullseye/main amd64 eatmydata all 105-9 [16.2 kB]
Get:4 http://deb.debian.org/debian bullseye/main amd64 lsb-release all 11.1.0 [27.9 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 67.2 kB in 0s (2047 kB/s)
Selecting previously unselected package distro-info-data.
(Reading database ... 23422 files and directories currently installed.)
Preparing to unpack .../distro-info-data_0.51+deb11u2_all.deb ...
Unpacking distro-info-data (0.51+deb11u2) ...
Selecting previously unselected package libeatmydata1:amd64.
Preparing to unpack .../libeatmydata1_105-9_amd64.deb ...
Unpacking libeatmydata1:amd64 (105-9) ...
Selecting previously unselected package eatmydata.
Preparing to unpack .../eatmydata_105-9_all.deb ...
Unpacking eatmydata (105-9) ...
Selecting previously unselected package lsb-release.
Preparing to unpack .../lsb-release_11.1.0_all.deb ...
Unpacking lsb-release (11.1.0) ...
Setting up distro-info-data (0.51+deb11u2) ...
Setting up libeatmydata1:amd64 (105-9) ...
Setting up lsb-release (11.1.0) ...
Setting up eatmydata (105-9) ...
Processing triggers for libc-bin (2.31-13+deb11u4) ...
/$ echo "deb http://apt.postgresql.org/pub/repos/apt/ `lsb_release -cs`-pgdg main" | tee /etc/apt/sources.list.d/pgdg.list
deb http://apt.postgresql.org/pub/repos/apt/ bullseye-pgdg main
/$ wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | apt-key add -
Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)).
OK
/$ apt update
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Hit:1 http://deb.debian.org/debian bullseye InRelease
Hit:2 http://deb.debian.org/debian-security bullseye-security InRelease
Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
Get:4 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg InRelease [91.7 kB]
Get:5 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 Packages [253 kB]
Fetched 345 kB in 1s (300 kB/s)
Reading package lists...
Building dependency tree...
Reading state information...
2 packages can be upgraded. Run 'apt list --upgradable' to see them.
curl 7.74.0 (x86_64-pc-linux-gnu) libcurl/7.74.0 OpenSSL/1.1.1n zlib/1.2.11 brotli/1.0.9 libidn2/2.3.0 libpsl/0.21.0 (+libidn2/2.3.0) libssh2/1.9.0 nghttp2/1.43.0 librtmp/2.3
Release-Date: 2020-12-09
Protocols: dict file ftp ftps gopher http https imap imaps ldap ldaps mqtt pop3 pop3s rtmp rtsp scp sftp smb smbs smtp smtps telnet tftp
Features: alt-svc AsynchDNS brotli GSS-API HTTP2 HTTPS-proxy IDN IPv6 Kerberos Largefile libz NTLM NTLM_WB PSL SPNEGO SSL TLS-SRP UnixSockets
Checking for 'curl --version'...
Found.
/$ eatmydata apt install -y --no-install-recommends gcc unzip sudo graphviz libfreetype6-dev postgresql-client-13 libpq-dev libxml2-dev libxslt1-dev certbot python3-certbot-nginx rsync wget nginx acl nano less
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
libfreetype6-dev is already the newest version (2.10.4+dfsg-1+deb11u1).
libfreetype6-dev set to manually installed.
gcc is already the newest version (4:10.2.1-1).
libxml2-dev is already the newest version (2.9.10+dfsg-6.7+deb11u2).
libxslt1-dev is already the newest version (1.1.34-4+deb11u1).
unzip is already the newest version (6.0-26+deb11u1).
wget is already the newest version (1.21-1+deb11u1).
The following additional packages will be installed:
iproute2 libann0 libbpf0 libcap2 libcap2-bin libcdt5 libcgraph6 libgd3
libgeoip1 libgts-0.7-5 libgvc6 libgvpr2 liblab-gamut1 libmnl0
libnginx-mod-http-geoip libnginx-mod-http-image-filter
libnginx-mod-http-xslt-filter libnginx-mod-mail libnginx-mod-stream
libnginx-mod-stream-geoip libpathplan4 libpopt0 libpq5 libxaw7 libxmu6
libxpm4 libxtables12 nginx-common nginx-core pgdg-keyring
postgresql-client-common python3-acme python3-certbot python3-certifi
python3-cffi-backend python3-chardet python3-configargparse
python3-configobj python3-cryptography python3-distro python3-idna
python3-josepy python3-openssl python3-parsedatetime python3-pkg-resources
python3-pyparsing python3-requests python3-requests-toolbelt python3-rfc3339
python3-six python3-tz python3-urllib3 python3-zope.component
python3-zope.event python3-zope.hookable python3-zope.interface
Suggested packages:
python3-certbot-apache python-certbot-doc gsfonts graphviz-doc iproute2-doc
libgd-tools geoip-bin postgresql-doc-14 hunspell fcgiwrap nginx-doc ssl-cert
postgresql-13 postgresql-doc-13 python-acme-doc python-certbot-nginx-doc
python-configobj-doc python-cryptography-doc python3-cryptography-vectors
python-openssl-doc python3-openssl-dbg python3-setuptools
python-pyparsing-doc python3-socks python-requests-doc openssh-server
Recommended packages:
fonts-liberation libatm1 libpam-cap geoip-database libgts-bin python3-icu
The following NEW packages will be installed:
acl certbot graphviz iproute2 less libann0 libbpf0 libcap2 libcap2-bin
libcdt5 libcgraph6 libgd3 libgeoip1 libgts-0.7-5 libgvc6 libgvpr2
liblab-gamut1 libmnl0 libnginx-mod-http-geoip libnginx-mod-http-image-filter
libnginx-mod-http-xslt-filter libnginx-mod-mail libnginx-mod-stream
libnginx-mod-stream-geoip libpathplan4 libpopt0 libxaw7 libxmu6 libxpm4
libxtables12 nano nginx nginx-common nginx-core pgdg-keyring
postgresql-client-13 postgresql-client-common python3-acme python3-certbot
python3-certbot-nginx python3-certifi python3-cffi-backend python3-chardet
python3-configargparse python3-configobj python3-cryptography python3-distro
python3-idna python3-josepy python3-openssl python3-parsedatetime
python3-pkg-resources python3-pyparsing python3-requests
python3-requests-toolbelt python3-rfc3339 python3-six python3-tz
python3-urllib3 python3-zope.component python3-zope.event
python3-zope.hookable python3-zope.interface rsync sudo
The following packages will be upgraded:
libpq-dev libpq5
2 upgraded, 65 newly installed, 0 to remove and 0 not upgraded.
Need to get 11.4 MB of archives.
After this operation, 41.7 MB of additional disk space will be used.
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Get:2 http://deb.debian.org/debian bullseye/main amd64 rsync amd64 3.2.3-4+deb11u1 [396 kB]
Get:3 http://deb.debian.org/debian bullseye/main amd64 libbpf0 amd64 1:0.3-2 [98.3 kB]
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Get:5 http://deb.debian.org/debian bullseye/main amd64 libmnl0 amd64 1.0.4-3 [12.5 kB]
Get:6 http://deb.debian.org/debian bullseye/main amd64 libxtables12 amd64 1.8.7-1 [45.1 kB]
Get:7 http://deb.debian.org/debian bullseye/main amd64 libcap2-bin amd64 1:2.44-1 [32.6 kB]
Get:8 http://deb.debian.org/debian bullseye/main amd64 iproute2 amd64 5.10.0-4 [930 kB]
Get:9 http://deb.debian.org/debian bullseye/main amd64 less amd64 551-2 [133 kB]
Get:10 http://deb.debian.org/debian bullseye/main amd64 nano amd64 5.4-2+deb11u1 [656 kB]
Get:11 http://deb.debian.org/debian bullseye/main amd64 acl amd64 2.2.53-10 [60.6 kB]
Get:12 http://deb.debian.org/debian bullseye/main amd64 python3-cffi-backend amd64 1.14.5-1 [85.8 kB]
Get:13 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB]
Get:14 http://deb.debian.org/debian bullseye/main amd64 python3-cryptography amd64 3.3.2-1 [223 kB]
Get:15 http://deb.debian.org/debian bullseye/main amd64 python3-openssl all 20.0.1-1 [53.7 kB]
Get:16 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB]
Get:17 http://deb.debian.org/debian bullseye/main amd64 python3-josepy all 1.2.0-2 [28.4 kB]
Get:18 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB]
Get:19 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB]
Get:20 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB]
Get:21 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:22 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:23 http://deb.debian.org/debian bullseye/main amd64 python3-requests-toolbelt all 0.9.1-1 [41.7 kB]
Get:24 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB]
Get:25 http://deb.debian.org/debian bullseye/main amd64 python3-rfc3339 all 1.1-2 [6768 B]
Get:26 http://deb.debian.org/debian bullseye/main amd64 python3-acme all 1.12.0-2 [34.6 kB]
Get:27 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB]
Get:28 http://deb.debian.org/debian bullseye/main amd64 python3-configobj all 5.0.6-4 [35.8 kB]
Get:29 http://deb.debian.org/debian bullseye/main amd64 python3-distro all 1.5.0-1 [17.1 kB]
Get:30 http://deb.debian.org/debian bullseye/main amd64 python3-parsedatetime all 2.6-1 [41.3 kB]
Get:31 http://deb.debian.org/debian bullseye/main amd64 python3-zope.hookable amd64 5.0.1-1+b2 [12.8 kB]
Get:32 http://deb.debian.org/debian bullseye/main amd64 python3-zope.interface amd64 5.2.0-1 [142 kB]
Get:33 http://deb.debian.org/debian bullseye/main amd64 python3-zope.event all 4.4-3 [9420 B]
Get:34 http://deb.debian.org/debian bullseye/main amd64 python3-zope.component all 4.3.0-3 [43.1 kB]
Get:35 http://deb.debian.org/debian bullseye/main amd64 python3-certbot all 1.12.0-2 [194 kB]
Get:36 http://deb.debian.org/debian bullseye/main amd64 certbot all 1.12.0-2 [49.7 kB]
Get:37 http://deb.debian.org/debian bullseye/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB]
Get:38 http://deb.debian.org/debian bullseye/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB]
Get:39 http://deb.debian.org/debian bullseye/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB]
Get:40 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB]
Get:41 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB]
Get:42 http://deb.debian.org/debian bullseye/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB]
Get:43 http://deb.debian.org/debian bullseye/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB]
Get:44 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 libpq-dev amd64 14.5-1.pgdg110+1 [138 kB]
Get:45 http://deb.debian.org/debian bullseye/main amd64 libgvc6 amd64 2.42.2-5 [695 kB]
Get:46 http://deb.debian.org/debian bullseye/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB]
Get:47 http://deb.debian.org/debian bullseye/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB]
Get:48 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB]
Get:49 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB]
Get:50 http://deb.debian.org/debian bullseye/main amd64 graphviz amd64 2.42.2-5 [632 kB]
Get:51 http://deb.debian.org/debian bullseye/main amd64 libgeoip1 amd64 1.6.12-7 [92.5 kB]
Get:52 http://deb.debian.org/debian bullseye/main amd64 nginx-common all 1.18.0-6.1+deb11u2 [126 kB]
Get:53 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-http-geoip amd64 1.18.0-6.1+deb11u2 [98.4 kB]
Get:54 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-http-image-filter amd64 1.18.0-6.1+deb11u2 [102 kB]
Get:55 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-http-xslt-filter amd64 1.18.0-6.1+deb11u2 [100 kB]
Get:56 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-mail amd64 1.18.0-6.1+deb11u2 [129 kB]
Get:57 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-stream amd64 1.18.0-6.1+deb11u2 [155 kB]
Get:58 http://deb.debian.org/debian bullseye/main amd64 libnginx-mod-stream-geoip amd64 1.18.0-6.1+deb11u2 [97.6 kB]
Get:59 http://deb.debian.org/debian bullseye/main amd64 nginx-core amd64 1.18.0-6.1+deb11u2 [515 kB]
Get:60 http://deb.debian.org/debian bullseye/main amd64 nginx all 1.18.0-6.1+deb11u2 [92.9 kB]
Get:61 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB]
Get:62 http://deb.debian.org/debian bullseye/main amd64 python3-certbot-nginx all 1.10.1-1 [35.1 kB]
Get:63 http://deb.debian.org/debian bullseye/main amd64 sudo amd64 1.9.5p2-3 [1059 kB]
Get:64 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 libpq5 amd64 14.5-1.pgdg110+1 [173 kB]
Get:65 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 pgdg-keyring all 2018.2 [10.7 kB]
Get:66 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 postgresql-client-common all 243.pgdg110+1 [91.8 kB]
Get:67 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg/main amd64 postgresql-client-13 amd64 13.8-1.pgdg110+1 [1507 kB]
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/$ mkdir /var/www/jobe
cd /var/www/jobe
/var/www/jobe$ cp -r $RUNESTONE_PATH/docker/runguard .
/var/www/jobe$ /usr/local/bin/python3 $RUNESTONE_PATH/docker/runguard-install.py
Configuring for 10 simultaneous job runs
Web server is www-data
Make user jobe
Setting up file cache
Making required job-runner users
Set up Jobe runs directory (/home/jobe/runs)
Set up Jobe files directory (/home/jobe/files)
Set up Jobe log directory (/var/log/jobe)
Building runguard
Runguard installation complete
/var/www/jobe$ mkdir -p $WEB2PY_PATH
/var/www/jobe$ eatmydata chown www-data:www-data $WEB2PY_PATH
/var/www/jobe$ eatmydata chmod g+ws $WEB2PY_PATH
/srv$ eatmydata wget --no-verbose https://mdipierro.pythonanywhere.com/examples/static/2.21.1/web2py_src.zip
2022-10-10 19:18:09 URL:https://mdipierro.pythonanywhere.com/examples/static/2.21.1/web2py_src.zip [6812071/6812071] -> "web2py_src.zip" [1]
/srv$ eatmydata unzip -q web2py_src.zip
/srv$ rm -f web2py_src.zip
cd /srv/web2py/applications/runestone
/srv/web2py/applications/runestone$ rm -rf $WEB2PY_PATH/.cache/*
/srv/web2py/applications/runestone$ cp scripts/routes.py $WEB2PY_PATH/routes.py
/srv/web2py/applications/runestone$ eatmydata curl -sSL https://install.python-poetry.org | POETRY_HOME=/usr/local python3 -
Retrieving Poetry metadata
# Welcome to Poetry!
This will download and install the latest version of Poetry,
a dependency and package manager for Python.
It will add the `poetry` command to Poetry's bin directory, located at:
/usr/local/bin
You can uninstall at any time by executing this script with the --uninstall option,
and these changes will be reverted.
Installing Poetry (1.2.1)
Installing Poetry (1.2.1): Creating environment
Installing Poetry (1.2.1): Installing Poetry
Installing Poetry (1.2.1): Creating script
Installing Poetry (1.2.1): Done
Poetry (1.2.1) is installed now. Great!
You can test that everything is set up by executing:
`poetry --version`
/srv/web2py/applications/runestone$ mkdir -p $WEB2PY_PATH/logs
/srv/web2py/applications/runestone$ cp $RUNESTONE_PATH/docker/wsgihandler.py $WEB2PY_PATH/wsgihandler.py
/srv/web2py/applications/runestone$ rm /etc/nginx/sites-enabled/default
/srv/web2py/applications/runestone$ ln -sf $RUNESTONE_PATH/docker/nginx/sites-available/runestone /etc/nginx/sites-enabled/runestone
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/1 /var/log/nginx/access.log
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/2 /var/log/nginx/error.log
/srv/web2py/applications/runestone$ mkdir -p /var/log/celery
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/1 /var/log/celery/access.log
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/2 /var/log/celery/error.log
/srv/web2py/applications/runestone$ mkdir -p /var/log/gunicorn
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/1 /var/log/gunicorn/access.log
/srv/web2py/applications/runestone$ ln -sf /proc/1/fd/2 /var/log/gunicorn/error.log
/srv/web2py/applications/runestone$ cp $RUNESTONE_PATH/docker/routes.py $WEB2PY_PATH
/srv/web2py/applications/runestone$ ln -sf $RUNESTONE_PATH/.venv/bin/sphinx-build /usr/local/bin
/srv/web2py/applications/runestone$ ln -sf $BOOK_SERVER_PATH $WEB2PY_PATH/applications/BookServer
/srv/web2py/applications/runestone$ ln -sf /srv/bookserver-dev $WEB2PY_PATH/applications/bookserver-dev
/srv/web2py/applications/runestone$ ln -sf /srv/RunestoneComponents $WEB2PY_PATH/applications/RunestoneComponents
/srv/web2py/applications/runestone$ ln -sf /srv/runestone-dev $WEB2PY_PATH/applications/runestone-dev
/srv/web2py/applications/runestone$ eatmydata sudo apt -y update
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Hit:1 http://deb.debian.org/debian bullseye InRelease
Hit:2 http://deb.debian.org/debian-security bullseye-security InRelease
Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
Hit:4 http://apt.postgresql.org/pub/repos/apt bullseye-pgdg InRelease
Reading package lists...
Building dependency tree...
Reading state information...
All packages are up to date.
/srv/web2py/applications/runestone$ eatmydata sudo apt -y upgrade
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
/srv/web2py/applications/runestone$ eatmydata sudo apt -y autoclean
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
/srv/web2py/applications/runestone$ eatmydata sudo apt -y autoremove
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
/srv/web2py/applications/runestone$ rm -rf /tmp/* /var/tmp/*
/srv/web2py/applications/runestone$ rm -rf $RUNESTONE_PATH
Removing intermediate container 316c153f035a
---> 0b01bafdd83a
Step 13/13 : CMD ["bash","-c","source ~/.profile; IN_DOCKER=2 python3 ${RUNESTONE_PATH}/docker/docker_tools.py ${DOCKER_BUILD_ARGS}"]
---> Running in b95825f40df6
Removing intermediate container b95825f40df6
---> 7d1e60a7b83f
Successfully built 7d1e60a7b83f
Successfully tagged runestone/server:latest
sflood:~/rsdocker/RunestoneServer$ docker compose up
WARN[0000] The "STRIPE_SECRET_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "STRIPE_DEV_PUBLISHABLE_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "ADSENSEID" variable is not set. Defaulting to a blank string.
WARN[0000] The "STRIPE_TEST_PUBLISHABLE_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "EMAIL_SENDER" variable is not set. Defaulting to a blank string.
WARN[0000] The "EMAIL_LOGIN" variable is not set. Defaulting to a blank string.
WARN[0000] The "GOOGLE_GA" variable is not set. Defaulting to a blank string.
WARN[0000] The "STRIPE_PUBLISHABLE_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "STRIPE_DEV_SECRET_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "LOAD_BALANCER_HOST" variable is not set. Defaulting to a blank string.
WARN[0000] The "QUICK_START" variable is not set. Defaulting to a blank string.
WARN[0000] The "EMAIL_SERVER" variable is not set. Defaulting to a blank string.
WARN[0000] The "CERTBOT_EMAIL" variable is not set. Defaulting to a blank string.
WARN[0000] The "STRIPE_TEST_SECRET_KEY" variable is not set. Defaulting to a blank string.
WARN[0000] The "ADS_FILE" variable is not set. Defaulting to a blank string.
[+] Running 20/21
⠿ redis Pulled 12.6s
⠿ 729b630784ac Pull complete 7.6s
⠿ 065c77bf222a Pull complete 8.3s
⠿ 961784053f68 Pull complete 10.8s
⠿ b42f16846808 Pull complete 11.4s
⠿ 0f1fa5bb0033 Pull complete 12.0s
⠿ db Pulled 21.6s
⠿ bd159e379b3b Pull complete 6.8s
⠿ b955aac8d5e0 Pull complete 8.0s
⠿ 922fe4565b9a Pull complete 8.3s
⠿ c39aa91943e9 Pull complete 9.0s
⠿ 59e6d12f4c90 Pull complete 12.1s
⠿ d058e68b8750 Pull complete 12.5s
⠿ 03549096a058 Pull complete 12.7s
⠿ c941aeed5670 Pull complete 12.9s
⠿ e9ef221e3196 Pull complete 20.6s
⠿ 3f8b796beddc Pull complete 20.8s
⠿ ea86c34b7e75 Pull complete 20.8s
⠿ c5a56a4056cc Pull complete 20.9s
⠿ 28155096b4b0 Pull complete 21.0s
⠿ jobe Error 0.2s
[+] Building 100.9s (9/9) FINISHED
=> [internal] load build definition from Dockerfile 0.2s
=> => transferring dockerfile: 592B 0.0s
=> [internal] load .dockerignore 0.1s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/trampgeek/jobeinabox:latest 0.5s
=> [internal] load build context 0.3s
=> => transferring context: 3.99MB 0.3s
=> [1/4] FROM docker.io/trampgeek/jobeinabox:latest@sha256:3b69b1dcb5db8b587048aabf3c44eef5b3a9d605dcaef 58.3s
=> => resolve docker.io/trampgeek/jobeinabox:latest@sha256:3b69b1dcb5db8b587048aabf3c44eef5b3a9d605dcaef0 0.0s
=> => sha256:a31c7b29f4ad2bd946738970f040825704a523ded1b9d6f9c7c7cafc6ab731df 28.57MB / 28.57MB 0.6s
=> => sha256:0bae43576a4639243025c3521dc8ccc2bf1d0393867e5ff821ad86b0adc2c03a 580B / 580B 0.2s
=> => sha256:03faafbb74e4e164429f107125b8b93c270182480213d56bb889b9bb0b93e540 293B / 293B 0.3s
=> => sha256:3b69b1dcb5db8b587048aabf3c44eef5b3a9d605dcaef07ee3e4f8466919c3b1 1.16kB / 1.16kB 0.0s
=> => sha256:43e327d051f626462289b7419691a52b531dca19647c5aed9a2861fa17b67842 7.37kB / 7.37kB 0.0s
=> => sha256:3664762a2d648ac491f085296fe834ba744198e4f547ed6baca5b1a555fe1554 576.61MB / 576.61MB 21.1s
=> => extracting sha256:a31c7b29f4ad2bd946738970f040825704a523ded1b9d6f9c7c7cafc6ab731df 3.5s
=> => extracting sha256:0bae43576a4639243025c3521dc8ccc2bf1d0393867e5ff821ad86b0adc2c03a 0.0s
=> => extracting sha256:03faafbb74e4e164429f107125b8b93c270182480213d56bb889b9bb0b93e540 0.0s
=> => extracting sha256:3664762a2d648ac491f085296fe834ba744198e4f547ed6baca5b1a555fe1554 36.1s
=> [2/4] COPY include/* /usr/include/ 0.3s
=> [3/4] RUN rm -rf /var/www/html/jobe && git clone https://github.com/RunestoneInteractive/jobe.git 3.4s
=> [4/4] RUN pip3 install install beautifulsoup4 pandas requests altair 32.9s
=> exporting to image 5.0s
=> => exporting layers 5.0s
=> => writing image sha256:0b8464b515b3acae0877031194b1c9dbc18177538dfa3318b9a8fc6c01ea4168 0.0s
=> => naming to docker.io/runestone/jobeinabox 0.0s
Use 'docker scan' to run Snyk tests against images to find vulnerabilities and learn how to fix them
[+] Running 5/5
⠿ Network runestoneserver_default Created 0.1s
⠿ Container runestoneserver-redis-1 Created 0.2s
⠿ Container runestoneserver-db-1 Created 0.2s
⠿ Container runestoneserver-jobe-1 Created 0.2s
⠿ Container runestoneserver-runestone-1 Created 0.1s
Attaching to runestoneserver-db-1, runestoneserver-jobe-1, runestoneserver-redis-1, runestoneserver-runestone-1
runestoneserver-redis-1 | 1:C 10 Oct 2022 19:22:01.264 # oO0OoO0OoO0Oo Redis is starting oO0OoO0OoO0Oo
runestoneserver-redis-1 | 1:C 10 Oct 2022 19:22:01.265 # Redis version=7.0.5, bits=64, commit=00000000, modified=0, pid=1, just started
runestoneserver-redis-1 | 1:C 10 Oct 2022 19:22:01.265 # Warning: no config file specified, using the default config. In order to specify a config file use redis-server /path/to/redis.conf
runestoneserver-redis-1 | 1:M 10 Oct 2022 19:22:01.270 * monotonic clock: POSIX clock_gettime
runestoneserver-redis-1 | 1:M 10 Oct 2022 19:22:01.275 * Running mode=standalone, port=6379.
runestoneserver-redis-1 | 1:M 10 Oct 2022 19:22:01.276 # Server initialized
runestoneserver-redis-1 | 1:M 10 Oct 2022 19:22:01.277 # WARNING overcommit_memory is set to 0! Background save may fail under low memory condition. To fix this issue add 'vm.overcommit_memory = 1' to /etc/sysctl.conf and then reboot or run the command 'sysctl vm.overcommit_memory=1' for this to take effect.
runestoneserver-redis-1 | 1:M 10 Oct 2022 19:22:01.279 * Ready to accept connections
runestoneserver-db-1 | The files belonging to this database system will be owned by user "postgres".
runestoneserver-db-1 | This user must also own the server process.
runestoneserver-db-1 |
runestoneserver-db-1 | The database cluster will be initialized with locale "en_US.utf8".
runestoneserver-db-1 | The default database encoding has accordingly been set to "UTF8".
runestoneserver-db-1 | The default text search configuration will be set to "english".
runestoneserver-db-1 |
runestoneserver-db-1 | Data page checksums are disabled.
runestoneserver-db-1 |
runestoneserver-db-1 | fixing permissions on existing directory /var/lib/postgresql/data ... ok
runestoneserver-db-1 | creating subdirectories ... ok
runestoneserver-db-1 | selecting dynamic shared memory implementation ... posix
runestoneserver-jobe-1 | [Tue Oct 11 08:22:01.808855 2022] [core:warn] [pid 7] AH00098: pid file /var/run/apache2/apache2.pid overwritten -- Unclean shutdown of previous Apache run?
runestoneserver-jobe-1 | [Tue Oct 11 08:22:01.845333 2022] [mpm_prefork:notice] [pid 7] AH00163: Apache/2.4.41 (Ubuntu) configured -- resuming normal operations
runestoneserver-jobe-1 | [Tue Oct 11 08:22:01.845386 2022] [core:notice] [pid 7] AH00094: Command line: '/usr/sbin/apache2 -D FOREGROUND'
runestoneserver-db-1 | selecting default max_connections ... 100
runestoneserver-db-1 | selecting default shared_buffers ... 128MB
runestoneserver-db-1 | selecting default time zone ... Etc/UTC
runestoneserver-db-1 | creating configuration files ... ok
runestoneserver-db-1 | running bootstrap script ... ok
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ /usr/local/bin/python3 -m pip install --user toml
runestoneserver-db-1 | performing post-bootstrap initialization ... ok
runestoneserver-db-1 | syncing data to disk ... ok
runestoneserver-db-1 |
runestoneserver-db-1 | initdb: warning: enabling "trust" authentication for local connections
runestoneserver-db-1 | You can change this by editing pg_hba.conf or using the option -A, or
runestoneserver-db-1 | --auth-local and --auth-host, the next time you run initdb.
runestoneserver-db-1 |
runestoneserver-db-1 | Success. You can now start the database server using:
runestoneserver-db-1 |
runestoneserver-db-1 | pg_ctl -D /var/lib/postgresql/data -l logfile start
runestoneserver-db-1 |
runestoneserver-db-1 | waiting for server to start....2022-10-10 19:22:05.848 UTC [46] LOG: starting PostgreSQL 13.8 (Debian 13.8-1.pgdg110+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 10.2.1-6) 10.2.1 20210110, 64-bit
runestoneserver-db-1 | 2022-10-10 19:22:05.855 UTC [46] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
runestoneserver-db-1 | 2022-10-10 19:22:05.868 UTC [47] LOG: database system was shut down at 2022-10-10 19:22:05 UTC
runestoneserver-db-1 | 2022-10-10 19:22:05.882 UTC [46] LOG: database system is ready to accept connections
runestoneserver-db-1 | done
runestoneserver-db-1 | server started
runestoneserver-db-1 | CREATE DATABASE
runestoneserver-db-1 |
runestoneserver-db-1 |
runestoneserver-db-1 | /usr/local/bin/docker-entrypoint.sh: ignoring /docker-entrypoint-initdb.d/*
runestoneserver-db-1 |
runestoneserver-db-1 | 2022-10-10 19:22:06.622 UTC [46] LOG: received fast shutdown request
runestoneserver-db-1 | waiting for server to shut down....2022-10-10 19:22:06.626 UTC [46] LOG: aborting any active transactions
runestoneserver-db-1 | 2022-10-10 19:22:06.634 UTC [46] LOG: background worker "logical replication launcher" (PID 53) exited with exit code 1
runestoneserver-db-1 | 2022-10-10 19:22:06.644 UTC [48] LOG: shutting down
runestoneserver-db-1 | 2022-10-10 19:22:06.676 UTC [46] LOG: database system is shut down
runestoneserver-db-1 | done
runestoneserver-db-1 | server stopped
runestoneserver-db-1 |
runestoneserver-db-1 | PostgreSQL init process complete; ready for start up.
runestoneserver-db-1 |
runestoneserver-db-1 | 2022-10-10 19:22:06.826 UTC [1] LOG: starting PostgreSQL 13.8 (Debian 13.8-1.pgdg110+1) on x86_64-pc-linux-gnu, compiled by gcc (Debian 10.2.1-6) 10.2.1 20210110, 64-bit
runestoneserver-db-1 | 2022-10-10 19:22:06.828 UTC [1] LOG: listening on IPv4 address "0.0.0.0", port 5432
runestoneserver-db-1 | 2022-10-10 19:22:06.829 UTC [1] LOG: listening on IPv6 address "::", port 5432
runestoneserver-db-1 | 2022-10-10 19:22:06.835 UTC [1] LOG: listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
runestoneserver-db-1 | 2022-10-10 19:22:06.849 UTC [60] LOG: database system was shut down at 2022-10-10 19:22:06 UTC
runestoneserver-db-1 | 2022-10-10 19:22:06.856 UTC [1] LOG: database system is ready to accept connections
runestoneserver-runestone-1 | Collecting toml
runestoneserver-runestone-1 | Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
runestoneserver-runestone-1 | Installing collected packages: toml
runestoneserver-runestone-1 | Successfully installed toml-0.10.2
runestoneserver-runestone-1 | WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ /usr/local/bin/python3 runestone_poetry_project/poetry_fix.py --no-dev
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ poetry config virtualenvs.in-project true
runestoneserver-runestone-1 | /srv/web2py/applications/runestone$ poetry install --no-dev
runestoneserver-runestone-1 | Creating virtualenv runestone-poetry-project in /srv/web2py/applications/runestone/.venv