hi ryan: 1. there is room for ebook ISBN and print ISBN on the Book Info page, which has been there for years i think
2. the ebook ISBN gets added to ebook metadata, the print ISBN doesn't do anything
3. while strictly you should have a different ISBN for MOBI & EPUB, most publishers I know of just use 2 ISBNs: ebook + print ... not 3 (MOBI, EPUB, Print)
4. finally, you can add whatever you like in the copyright notice, usually something like:
"ISBN (print): 259827345092873450982"
"ISBN (ebook): 72349058720934578"