Issue with reading model files?

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david davtian

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Nov 17, 2025, 12:00:47 PM11/17/25
to PrediXcan/MetaXcan
Good morning/afternoon/evening,

I am writing here because I have a small issue with the running of SPrediXcan. I am running SPrediXcan with this environement : image_2025-11-17_115609967.png
And with this script : 
image_2025-11-17_115707397.png
I ran the exact same analysis a few months ago and it went smoothly, but for some reason, this time when running this script, I am getting this error : 
image_2025-11-17_115827878.png
Which, from tracking it in the metax files is due to a sqlite issue ? But my setup hasn't changed from last time I used it and it worked perfectly. 
Where do you think this error could be coming from? I've also double checked my GWAS file and the names are correct, I downloaded the latest version of MetaXcan , with the right version of GTEx models as well (with phi, but I also tried with v7 and v8 models and same error).

Thank you very much for your help on that matter, 
Best regards, 

David
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