Re: PredictDB Data Repository

[Hae Kyung Im]

Hi Narges,

could you share the link that you are referring to?

Thanks

Haky

On Wed, Aug 28, 2024 at 10:44 AM Zafari, Narges <NA...@pitt.edu> wrote:

Dear Recipient,

I hope you are doing well. 

In the repository, I am unable to download "S-MultiXcan expression’s LD reference." It is broken. 

Is it under maintenance? Is there any alternative repository I can use to get the same data?

Thank you for your kind help.

Sincerely,

Narges Zafari

PhD Student | Human Genetics 

Graduate Student Researcher | Dr. Kamboh Lab

University of Pittsburgh 

[Hae Kyung Im]

Thank you, Narges, for bringing this to my attention.

It seems that zenodo made some changes to their hosting setup. You can go to the zenodo page and download the files from there directly. https://zenodo.org/records/3518299 

I've edited the predictdb page and added this option as a note.

Thanks

Haky

On Wed, Aug 28, 2024 at 10:51 AM Zafari, Narges <NA...@pitt.edu> wrote:

Hi Haky,

Thank you for your response. 

You may go to: https://predictdb.org/post/2021/07/21/gtex-v8-models-on-eqtl-and-sqtl/

Then, under the "1 MASHR-based models" third and fourth hyperlinks are broken. 

Here is the direct link to both: 
https://zenodo.org/records/3518299/files/gtex_v8_expression_mashr_snp_smultixcan_covariance.txt.gz

https://zenodo.org/records/3518299/files/gtex_v8_splicing_mashr_snp_smultixcan_covariance.txt.gz

Thank you so much.

Sincerely,

Narges Zafari

PhD Student | Human Genetics 

Graduate Student Researcher | Dr. Kamboh Lab

University of Pittsburgh 

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From: Hae Kyung Im <ha...@uchicago.edu>
Sent: Wednesday, August 28, 2024 11:46 AM
To: Zafari, Narges <NA...@pitt.edu>
Cc: PrediXcan/MetaXcan <predixca...@googlegroups.com>
Subject: Re: PredictDB Data Repository