predictdb tutorial

[Rhea Bedi]

Hello everyone,

I have a doubt while I was running predictdb tutorial.

There are two files required in training the model step: one is gene_annot.parsed.txt and snp_annot.chr*.txt

I want to know whether these files would differ if I want to train the model on my GTEX datasets.

And is there any input and file requirements for these two?

Like for example genotype.chr*.txt has to have a header with sample ID and is need to be tab delimited separated file. 

Thank you for creating such an easy tutorial to follow!

[Festus]

Hi

Check the file descriptions here https://github.com/hakyimlab/PredictDB-Tutorial/wiki/File-descriptions

[Rhea Bedi]

Thank you for sharing the link