exception with pplacer

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Cong Xu

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Oct 27, 2020, 4:20:47 AM10/27/20
to pplacer users
Dear  colleagues:
  I ran into a problem during I using PPLACER
  I typed "pplacer -t ../test_ref.nwk -r ../test_ref.fasta aln.fasta", 
  However, a Uncaught exception occurred:

    Uncaught exception: syntax error parsing between line 1 character 21593 and line 1 character 21594 of ../test_ref.nwk
Running pplacer v1.1.alpha19-0-g807f6f3 analysis on aln.fasta...
Fatal error: exception Ppatteries.Sparse.Parse_error("syntax error parsing", _, _, _).


I have trouble to find what's wrong in the "nwk" file, and the file can be found in appendix.

sincerely

Cong Xu

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Oct 27, 2020, 8:56:45 PM10/27/20
to pplacer users
  The "nwk" file is end with ");", which is from  line 1 character 21593 to  line 1 character 21594.  
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