how to plot population ancestry values as DAPC plots?

[genetist]

Dear All

Good Evening

i have dataset (csV file) with Individuals and their Q values as columns. Now i would like to plot them as clusters like DAPC clusters. how to do this by importing ancestry values as dataframe. i need your help to plot these ancestry valus.

Thanking you very much.

Regards

[Zhian Kamvar]

I'm not sure how you are expecting to achieve this, but you can plot the Linear Discriminants by extracting them from the DAPC object and plotting them with ggplot2.

I have a (somewhat tortuous) example in a paper I wrote at the end of 2017: https://github.com/everhartlab/sclerotinia-366/blob/master/results/pop-diff.md. You can find the extraction of the DAPC data if you search for `LDS`

Hope that helps

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