Hello,
I am trying to run the following amova test:
amova.result_CCR <- poppr.amova(vcf_Bcin_genlight, ~CCR)
I have no problems running it on most populations, but when I try to run "CCR", I get this error:
Error in ade4::amova(samples = xtab, distances = xdist, structures = xstruct) :
Non convenient samples
In addition: Warning message:
In poppr.amova(vcf_Bcin_genlight, ~CCR) :
Missing data are not filtered from genlight data.
My column titled CCR contains values 0-7, but has missing data because not all isolates were phenotyped. Is there a good way to subset the data or ignore missing data? I tried looking through previous conversations but nothing I have tried has worked.
Thanks in advance,
Nikki