Private alleles biased by population size

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Zoe Meziere

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Apr 16, 2024, 11:42:20 AMApr 16
to poppr
Hello,

I am using the private_alleles() function, and my results seem to be highly biased by the sample size (i.e., more private alleles found in larger populations). Is there a way to correct for this, using rarefaction for example? 

Cheers,

Zhian Kamvar

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Apr 16, 2024, 11:45:34 AMApr 16
to Zoe Meziere, poppr
At the moment, poppr does not have this functionality. There was a feature request for something like this opened a few years ago, but more details were needed to implement it: https://github.com/grunwaldlab/poppr/issues/195.



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