Groups

popABC

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Alfredo Ortiz, Joao Sollari Lopes2

3/26/24

problem in DIY ABC

his google group is for popABC, a software that was published in 2009. As far as I know, this is the

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problem in DIY ABC

his google group is for popABC, a software that was published in 2009. As far as I know, this is the

3/26/24

Kunal Arekar, … Joao Sollari Lopes3

3/26/24

diyABC - Error in Reference table generation

guys, this google group is for popABC, a software that was published in 2009. As far as I know, this

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diyABC - Error in Reference table generation

guys, this google group is for popABC, a software that was published in 2009. As far as I know, this

3/26/24

Arley Camargo, Joao Sollari Lopes3

5/3/22

nexus2table in mac

Thanks Joao for the "heads-up!" All the best, a ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

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nexus2table in mac

Thanks Joao for the "heads-up!" All the best, a ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

5/3/22

Oscar Huanel, Weeds2

3/17/22

error during estimaion of scenario confidence and type I and type II error (with return code 3)

Hi, this is a bit of a longshot but did you ever work out why you got this error Oscar? I am getting

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error during estimaion of scenario confidence and type I and type II error (with return code 3)

Hi, this is a bit of a longshot but did you ever work out why you got this error Oscar? I am getting

3/17/22

Alice Mouton, Joao Sollari Lopes2

7/20/20

DiYABC errror message

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else in the google groups can

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DiYABC errror message

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else in the google groups can

7/20/20

beli...@gmx.de, Joao Sollari Lopes2

7/20/20

Does DIYABC also consider positions that are NOT polymorphic? And how to convert Nexus/Fasta into Genepop?

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else in the google groups can

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Does DIYABC also consider positions that are NOT polymorphic? And how to convert Nexus/Fasta into Genepop?

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else in the google groups can

7/20/20

Federica Lucati, Joao Sollari Lopes2

7/20/20

DIYABC: Pre-evaluation of scenarios

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

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DIYABC: Pre-evaluation of scenarios

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

7/20/20

Federica Lucati, Joao Sollari Lopes2

7/20/20

DIYABC Pre-evaluation of scenarios: too many stars

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

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DIYABC Pre-evaluation of scenarios: too many stars

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

7/20/20

junchu peng, Joao Sollari Lopes2

4/13/19

DIYABC: Erreur dans readheaders().

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

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DIYABC: Erreur dans readheaders().

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

4/13/19

rea...@zju.edu.cn, Joao Sollari Lopes2

4/13/19

diyabc: input file with two kinds of data (RAD-SNPs, 20 ssrs)

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

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diyabc: input file with two kinds of data (RAD-SNPs, 20 ssrs)

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

4/13/19

Gustavo Tavares, Joao Sollari Lopes2

11/25/18

DIY ABC software and manual

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

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DIY ABC software and manual

Hi, I'm afraid I don't know how to use DIY ABC. Maybe someone else can help you with that.

11/25/18

4/2/17

Topologies with more than five populations

Hi there! I'm using PopABC to infer demographic history of 8 natural populations. I have

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Topologies with more than five populations

Hi there! I'm using PopABC to infer demographic history of 8 natural populations. I have

4/2/17

4/2/17

Hi there! I'm using PopABC to infer demographic history of 8 natural populations. I have

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Hi there! I'm using PopABC to infer demographic history of 8 natural populations. I have

4/2/17

Kritika Garg, … Kritika Garg4

12/3/16

help with setting up migration matrix

Dear Joao, Thank you for you help. I would like to extent the above model and add another event

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help with setting up migration matrix

Dear Joao, Thank you for you help. I would like to extent the above model and add another event

12/3/16

1/15/16

transformation of data

Hi, I have been reading in publications such as Lopes and Boessenkool 2010 two steps related to data

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transformation of data

Hi, I have been reading in publications such as Lopes and Boessenkool 2010 two steps related to data

1/15/16

12/11/15

generation times <1 year

Hi, I am working with rats, which have a generation time of 0,5 year. Whenever I try to create to

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generation times <1 year

Hi, I am working with rats, which have a generation time of 0,5 year. Whenever I try to create to

12/11/15

11/13/15

problems running popABC for real data

Dear Dr. Lopes, I'm currently trying to use popABC on a real dataset which includes 4 populations

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problems running popABC for real data

Dear Dr. Lopes, I'm currently trying to use popABC on a real dataset which includes 4 populations

11/13/15

Balaji Chattopadhyay, Joao Sollari Lopes2

3/14/15

Hi Balaji, popABC deals with SNPs as sets of 0s and 1s. if you consider SNP's with only two

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Hi Balaji, popABC deals with SNPs as sets of 0s and 1s. if you consider SNP's with only two

3/14/15

Li, Joao Sollari Lopes5

12/11/14

Dear Joao, Thank you so much for all you have done. I performed the analyses using the old data

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Dear Joao, Thank you so much for all you have done. I performed the analyses using the old data

12/11/14

r.a....@exeter.ac.uk, … Joao Sollari Lopes5

9/15/14

Errors running R scripts

Thanks for that Paul. You are absolutely right. You should change "predict.locfit" for

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Errors running R scripts

Thanks for that Paul. You are absolutely right. You should change "predict.locfit" for

9/15/14

miguelcama...@gmail.com, Joao Sollari Lopes2

9/9/14

Problems with hitting distribution of real data

Hi Miguel, You should set some variation to the prior of the mutation rate something like normal(4e-

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Problems with hitting distribution of real data

Hi Miguel, You should set some variation to the prior of the mutation rate something like normal(4e-

9/9/14

Pooja Gupta, … Joao Sollari Lopes4

8/1/14

error in tev plot during regression step

Hi Federica, Ups, I forgot to attach the script. Here it goes in attachment. Also I meant no

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error in tev plot during regression step

Hi Federica, Ups, I forgot to attach the script. Here it goes in attachment. Also I meant no

8/1/14

francesc...@gmail.com, Joao Sollari Lopes2

7/25/14

error when using summdata

Hi Francesco, The problem is that there is a problem when calculating the number of summary

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error when using summdata

Hi Francesco, The problem is that there is a problem when calculating the number of summary

7/25/14

Thierry Gosselin, Joao Sollari Lopes2

7/24/14

error::incorrect number of digits in locus!

Hi Thierry, The trouble is that the genepop to table file converter was not designed for very many

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error::incorrect number of digits in locus!

Hi Thierry, The trouble is that the genepop to table file converter was not designed for very many

7/24/14

federica mattucci, Joao Sollari Lopes2

7/23/14

Error incurred plotting the rejection file in R

Hi Federica, The script you mention in your email is the one that performs the regression-step, not

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Error incurred plotting the rejection file in R

Hi Federica, The script you mention in your email is the one that performs the regression-step, not

7/23/14

federica mattucci, Joao Sollari Lopes3

10/7/13

How choose the topology with more than 5 populations

thank you very much!!! Federica

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How choose the topology with more than 5 populations

thank you very much!!! Federica

10/7/13

Sang Chul Choi, Joao Sollari Lopes3

6/5/13

A single population with population size change such as bottleneck?

Thank you! -SCC On Monday, May 27, 2013 5:38:13 AM UTC-8, Joao Sollari Lopes wrote: Hi SangChul, 1)

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A single population with population size change such as bottleneck?

Thank you! -SCC On Monday, May 27, 2013 5:38:13 AM UTC-8, Joao Sollari Lopes wrote: Hi SangChul, 1)

6/5/13

Aryn W, Joao Sollari Lopes2

4/8/13

Converting multiple loci from .nex to .len

Hi Aryn, I am afraid the .nex to .len file can only deal with data with 1 locus. I guess the best bet

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Converting multiple loci from .nex to .len

Hi Aryn, I am afraid the .nex to .len file can only deal with data with 1 locus. I guess the best bet

4/8/13

Ane Hahn, Joao Sollari Lopes4

2/19/13

times not monotonic increasing

Hi Anelise, Would it be ok if you attach the prior file you created so that I can take a look? Joao

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times not monotonic increasing

Hi Anelise, Would it be ok if you attach the prior file you created so that I can take a look? Joao

2/19/13

Kritika Garg, Joao Sollari Lopes2

1/16/13

help with posteriors

Hi Kritika, Regarding question 1), what is saved in the .dat file are the values taken by the hyper

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help with posteriors

Hi Kritika, Regarding question 1), what is saved in the .dat file are the values taken by the hyper

1/16/13

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