problem installing popHealth latest version
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George Lilly
Sep 20, 2014, 6:37:45 PM9/20/14
to popheal...@googlegroups.com
I've tried a couple of times now to follow the instructions for installing popHealth and I've run into some problems. Any pointers would be appreciated.
thanks
gpl
I'm up to the step of loading the bundle.. Here's the error:
Script started on Sat 20 Sep 2014 09:57:57 PM UTC
pophealth@popHealth1:~/popHealth$ exit bundle exec rake bundle:import[/home/pophealth/
/bundle-latest.zip,false,false,'*',true,true]
bundle exec rake bundle:import[/home/pophealth//bundle-latest.zip,false,false,'*',true,true]
rake aborted!
Moped::Errors::ConnectionFailure: Could not connect to a primary node for replica set #<Moped::Cluster:82967480 @seeds=[<Moped::Node resolved_address="127.0.1.1:27017">]>
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/cluster.rb:248:in `with_primary'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/primary.rb:55:in `block in with_node'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:65:in `call'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:65:in `with_retry'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:71:in `rescue in with_retry'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:64:in `with_retry'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/primary.rb:54:in `with_node'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/database.rb:72:in `command'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/query.rb:41:in `count'
/home/pophealth/popHealth/config/initializers/popHealth.rb:10:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `block in load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:648:in `block in load_config_initializer'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/notifications.rb:161:in `instrument'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:647:in `load_config_initializer'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:612:in `block (2 levels) in <class:Engine>'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:611:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:611:in `block in <class:Engine>'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:30:in `instance_exec'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:30:in `run'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:55:in `block in run_initializers'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:44:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:44:in `tsort_each_child'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:54:in `run_initializers'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/application.rb:300:in `initialize!'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `public_send'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `method_missing'
/home/pophealth/popHealth/config/environment.rb:5:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `require'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `block in require'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `require'
/home/pophealth/popHealth/lib/tasks/admin.rake:1:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `block in load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `block in run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/application.rb:374:in `run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:449:in `load_tasks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `public_send'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `method_missing'
/home/pophealth/popHealth/Rakefile:15:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/bin/ruby_executable_hooks:15:in `eval'
/usr/local/rvm/gems/ruby-2.1.2/bin/ruby_executable_hooks:15:in `<main>'
Moped::Errors::ConnectionFailure: Could not connect to a primary node for replica set #<Moped::Cluster:82967480 @seeds=[<Moped::Node resolved_address="127.0.1.1:27017">]>
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/cluster.rb:248:in `with_primary'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/primary.rb:55:in `block in with_node'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:65:in `call'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/selectable.rb:65:in `with_retry'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/read_preference/primary.rb:54:in `with_node'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/database.rb:72:in `command'
/usr/local/rvm/gems/ruby-2.1.2/gems/moped-2.0.0/lib/moped/query.rb:41:in `count'
/home/pophealth/popHealth/config/initializers/popHealth.rb:10:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `block in load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:648:in `block in load_config_initializer'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/notifications.rb:161:in `instrument'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:647:in `load_config_initializer'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:612:in `block (2 levels) in <class:Engine>'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:611:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:611:in `block in <class:Engine>'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:30:in `instance_exec'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:30:in `run'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:55:in `block in run_initializers'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:44:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:44:in `tsort_each_child'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/initializable.rb:54:in `run_initializers'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/application.rb:300:in `initialize!'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `public_send'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `method_missing'
/home/pophealth/popHealth/config/environment.rb:5:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `require'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `block in require'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:247:in `require'
/home/pophealth/popHealth/lib/tasks/admin.rake:1:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `block in load'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:232:in `load_dependency'
/usr/local/rvm/gems/ruby-2.1.2/gems/activesupport-4.1.5/lib/active_support/dependencies.rb:241:in `load'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `block in run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `each'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:654:in `run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/application.rb:374:in `run_tasks_blocks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/engine.rb:449:in `load_tasks'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `public_send'
/usr/local/rvm/gems/ruby-2.1.2/gems/railties-4.1.5/lib/rails/railtie.rb:194:in `method_missing'
/home/pophealth/popHealth/Rakefile:15:in `<top (required)>'
/usr/local/rvm/gems/ruby-2.1.2/bin/ruby_executable_hooks:15:in `eval'
/usr/local/rvm/gems/ruby-2.1.2/bin/ruby_executable_hooks:15:in `<main>'
(See full trace by running task with --trace)
pophealth@popHealth1:~/popHealth$ exit
exit
Script done on Sat 20 Sep 2014 09:58:14 PM UTC
Here's the contents of test.log:
pophealth@popHealth1:~/popHealth/log$ cat test.log
MOPED: 127.0.1.1:27017 COMMAND database=admin command={:ismaster=>1} runtime: 1.7633ms
MOPED: Retrying connection attempt 1 more time(s). runtime: n/a
MOPED: 127.0.1.1:27017 COMMAND database=admin command={:ismaster=>1} runtime: 1.5312ms
And here's what mongo has in it:
pophealth@popHealth1:~/popHealth/log$ mongo
MongoDB shell version: 2.6.4
connecting to: test
> show dbs
admin (empty)
local 0.078GB
test (empty)
George Lilly
Sep 21, 2014, 1:23:13 PM9/21/14
to popheal...@googlegroups.com
I fixed the problem... It turned out there were two lines for loccalhost in the /etc/hosts file. I commented out the one I didn't want:
127.0.0.1 localhost
#127.0.1.1 localhost
and the bundle loaded.
Successfully imported bundle at: /home/pophealth/bundle-latest.zip
Imported into environment: PRODUCTION
Loaded * measures
Sub-Measures Loaded: 155
Test Patients Loaded: 0
Extensions Loaded: 2
Value Sets Loaded: 817
I have no idea how that second line got there... it looks like a typo ...
gpl
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