Re: Running ponderosa

18 views

Skip to first unread message

Woonghee Lee

unread,

Mar 2, 2020, 4:51:13 PM3/2/20

to Thilini O Ukwaththage, ponderosa-...@googlegroups.com

Dear Thilini,

If HCCH-TOCSY aligns significantly better with your C-NOESY than C-HSQC and C(CO)NH/H(CCO)NH, it will. If not, not much helpful.

Directly assigning onto NOESY data will be the most helpful.

Cheers,

Woonghee

On Mon, 2020-03-02 at 21:48 +0000, Thilini O Ukwaththage wrote:

Dear Dr. Lee,

Thank you for your respond. When I type rl, it shows my assigned resonance. Do you think by assigning HCCH-TOCSY, it will help more in my structure calculation?

Regards

Thilini

Thilini Ukwaththage
Ph.D. Candidate
Macnaughtan Research Group
Choppin Hall 427
Department of Chemistry
Louisiana State University

Baton Rouge, LA 70803

From: Woonghee Lee <wle...@wisc.edu>
Sent: Monday, March 2, 2020 3:33 PM
To: Thilini O Ukwaththage <tuk...@lsu.edu>
Subject: Re: Running ponderosa

Hi,

As long as you see resonances assigned in "rl" window, you don't need to.

Best,

Woonghee

On Mon, 2020-03-02 at 21:28 +0000, Thilini O Ukwaththage wrote:

Dear Dr. Lee,

Hope you are doing good.

I am going to run ponderosa for my protein structure calculation. Do you think I should assign peaks in HCCH- TOCSY as well? I used HCCH- TOCSY to confirm my assignments but did not assign the peaks.

Have a nice day!

Thank you

Regards

Thilini

Thilini Ukwaththage
Ph.D. Candidate
Macnaughtan Research Group
Choppin Hall 427
Department of Chemistry
Louisiana State University

Baton Rouge, LA 70803

--

================================================

Woonghee Lee, I.E.I.P., M.S., Ph.D.

Assistant Scientist

and

Principal Investigator

National Magnetic Resonance Facility at Madison (NMRFAM)

and Biochemistry Department

University of Wisconsin-Madison

DeLuca Biochemistry Laboratories

433 Babcock Drive Rm B160E

Madison, WI USA 53706-1544

wh...@nmrfam.wisc.edu, wle...@wisc.edu

Office: +1-608-263-1722

https://sites.google.com/view/wlee-group

www.nmrfam.wisc.edu