Script to install Fiji on your linux machine

[Dilawar Singh]

Download/save the script from here https://raw.githubusercontent.com/PNCG/Scripts/master/install_fiji.sh

Use this script to install fiji. Go to the folder where you have saved the script:

$ chmod +x install_fiji.sh
$ ./install_fiji.sh

It will download (using wget) and install fiji. Make sure you have set the $http_proxy . 

$ export http_proxy=http://proxy.ncbs.res.in:3128

The installation directory will be ~/.local/bin . After installation,  open new terminal, and launch fiji

$ fiji

If you have any issue, please do write back to this email.

[Dilawar Singh]

As Kuldeep pointed out. Environment variable $PATH is not updated by script, therefore fiji won't launch in terminal. You can do it manually as well.

Open .bashrc file.

$ gedit ~/.bashrc

And append the following line 

export PATH=$HOME/.local/bin:$PATH

Close gedit, and relaunch the terminal. And you are done.

best,

     Dilawar 

[Kuldeep Sachdeva]

It worked :) Thanks Dilawar.

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With regards,

Kuldeep

Research Scholar

NCBS, Bangalore