pseq error : unknown option: options; Plz Plz respond!! its been already 3weeks since initial post

[meha...@gmail.com]

Hi,

I have been using plinkseq and met with the following error while using "loc-load"

$ /plinkseq-0.10/pseq burden new-project
Creating new project specification file [ burden.pseq ]

$ plinkseq-0.10/pseq burden load-vcf --vcf *.vcf
loading : RW176A1_SNP_INDELS_raw_Annotated.vcf ( 1 individuals )
parsed 102000 rows        
loading : BC907-PILOT_SNP_INDELS_raw_Annotated.vcf ( 1 individuals )
parsed 121000 rows        
loading : RW004A2_SNP_INDELS_raw_Annotated.vcf ( 1 individuals )
parsed 119000 rows        
loading : RW175A1_SNP_INDELS_raw_Annotated.vcf ( 1 individuals )
parsed 120000 rows        
RW176A1_SNP_INDELS_raw_Annotated.vcf : inserted 102700 variants
BC907-PILOT_SNP_INDELS_raw_Annotated.vcf : inserted 121013 variants
RW004A2_SNP_INDELS_raw_Annotated.vcf : inserted 118983 variants
RW175A1_SNP_INDELS_raw_Annotated.vcf : inserted 120648 variants

$ /plinkseq-0.10/pseq burden load-pheno --file pheno.txt
Processed 10 rows

$ /plinkseq-0.10/pseq burden i-view
#HC (Integer) Dichotomous phenotype
#PHE	.
#STRATA	.
#ID	FID	IID	MISS	SEX	PAT	MAT	META
P922_208	.	.	0	0	.	.	HC=2
P922_4001	.	.	0	0	.	.	HC=1
P922_172	.	.	0	0	.	.	HC=2
P922_173	.	.	0	0	.	.	HC=2

$ /plinkseq-0.10/pseq burden loc-load --file genes.gtf --group dogs --options gene_id
pseq error : unknown option: options


I tried using the program using sudo rights in mac and linux versions but is of no help. I posted in the forum where there is a similar post earlier and waited for 3 weeks but could not find a solution.

Since this is the only source of reporting questions about the program,i hope the authors or someone will help to fix this at the earliest possible time. Thanks.

[haiyin...@gmail.com]

I am getting the same error. and I contacted the author, They do not respond!!!!!!!!!

This software is extremely unfriendly. documentation is so confusing!!!!!