Operation timed out
fatma.b...@gmail.com
Hi Chris:
I am trying to download the HapMap data to perform population stratification for my data.
But every time I got this:
Data connection: Operation timed out
I cannot complete downloading the data, what could I do?
Please see what happens:
Last login: Fri Sep 18 20:46:37 on console
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(base) iMac-Fatma-Mokhtar:~ fatma.mokhtar$ cd Desktop
(base) iMac-Fatma-Mokhtar:Desktop fatma.mokhtar$ cd PS
(base) iMac-Fatma-Mokhtar:PS fatma.mokhtar$ wget ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
--2020-09-18 20:50:21-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
=> ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Resolving ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)... 130.14.250.12
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G) (unauthoritative)
ALL.2of4intersectio 3%[ ] 1,92G --.-KB/s in 40m 32s
2020-09-18 21:30:58 (827 KB/s) - Data connection: Operation timed out; Control connection closed.
Retrying.
--2020-09-18 21:46:16-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
(try: 2) => ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> REST 2059211160 ... done.
==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G), 63612880936 (59G) remaining (unauthoritative)
ALL.2of4intersection.2010 6%[+> ] 4,25G --.-KB/s in 46m 31s
2020-09-18 22:32:48 (875 KB/s) - Data connection: Operation timed out; Control connection closed.
Retrying.
--2020-09-18 23:04:39-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
(try: 3) => ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> REST 4558777720 ... done.
==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G), 61113314376 (57G) remaining (unauthoritative)
ALL.2of4intersection.2010 9%[++> ] 5,88G --.-KB/s in 39m 45s
2020-09-18 23:44:26 (721 KB/s) - Data connection: Operation timed out; Control connection closed.
Retrying.
--2020-09-19 00:38:24-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
(try: 4) => ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> REST 6319347344 ... done.
==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G), 59352744752 (55G) remaining (unauthoritative)
ALL.2of4intersection.2010 13%[+++> ] 8,03G --.-KB/s in 2h 9m
2020-09-19 02:47:45 (290 KB/s) - Data connection: Operation timed out; Control connection closed.
Retrying.
--2020-09-19 09:42:21-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
(try: 5) => ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> REST 8626014752 ... done.
==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G), 57046077344 (53G) remaining (unauthoritative)
ALL.2of4intersection.2010 13%[++++ ] 8,33G --.-KB/s in 32m 24s
2020-09-19 10:14:46 (160 KB/s) - Data connection: Operation timed out;
Control connection closed.
Retrying.
--2020-09-19 12:01:59-- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz
(try: 6) => ‘ALL.2of4intersection.20100804.genotypes.vcf.gz.2’
Connecting to ftp-trace.ncbi.nih.gov (ftp-trace.ncbi.nih.gov)|130.14.250.12|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /1000genomes/ftp/release/20100804 ... done.
==> SIZE ALL.2of4intersection.20100804.genotypes.vcf.gz ... 65672092096
==> PASV ... done. ==> REST 8944751408 ... done.
==> RETR ALL.2of4intersection.20100804.genotypes.vcf.gz ... done.
Length: 65672092096 (61G), 56727340688 (53G) remaining (unauthoritative)
ALL.2of4intersection.2010 17%[++++=> ] 10,65G --.-KB/s in 34m 58s
2020-09-19 12:36:59 (1,13 MB/s) - Data connection: Operation timed out;
Best regards,
Fatma Mokhtar